Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_N05
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar...    27   1.9  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    26   4.4  
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    26   5.8  

>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 256

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 449 KQQHRRVDAHCTLITHHHSFFTMSNLDLR 535
           K +++ +D    L THHH+  +  NL+L+
Sbjct: 48  KLKNKEIDLQAILTTHHHADHSGGNLNLK 76


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 602 PRPRCEHISPPRRSSTLRKCRWTLGPSLTS*RNCDG 495
           P P   H SPPR+ S   +  W + PS+++ +N  G
Sbjct: 229 PPPPVLH-SPPRKVSAQEQQDWQIPPSISNWKNPKG 263


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 672 PPPSEAPRDSPSPTEPPKLNLQMTAAE 592
           PP S+A R  P PTEPP +    T++E
Sbjct: 99  PPMSQAYR--PPPTEPPTVPAYETSSE 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,568
Number of Sequences: 5004
Number of extensions: 43088
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)