Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_N05
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14919| Best HMM Match : MAM (HMM E-Value=0)                         32   0.49 
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.65 
SB_9834| Best HMM Match : CXCXC (HMM E-Value=4.4)                      31   1.1  
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74)           29   4.6  
SB_49834| Best HMM Match : zf-AN1 (HMM E-Value=0.93)                   29   4.6  
SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16)                    28   6.0  
SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37)                28   6.0  

>SB_14919| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1332

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 5   NIKHNCTLTITXNSTFMSSIQ*NQNDLYSYNK 100
           +IK NCT  +T NS+ +     N+ND++ ++K
Sbjct: 303 SIKFNCTFDVTPNSSVLCGWSNNRNDVFDWSK 334


>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 23/59 (38%), Positives = 26/59 (44%)
 Frame = -2

Query: 677 RPLRLAKRPGTVRRRPNLLS*TCR*PRPRCEHISPPRRSSTLRKCRWTLGPSLTS*RNC 501
           RP R   RP     RP      CR     C +   PRR  TLR CR+TL P   + R C
Sbjct: 280 RPCRYTLRPCRYTLRP------CRYTLRPCRYTLRPRRY-TLRPCRYTLRPCRYTLRPC 331



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -2

Query: 677 RPLRLAKRPGTVRRRP--NLLS*TCR*PRPRCEHISPPRRSSTLRKCRWTLGPSLTS*RN 504
           RP R   RP     RP   +L   C   RP C ++  P R  TLR CR+TL P   + R 
Sbjct: 189 RPCRYMLRPCRYMLRPCRYMLRPCCYTLRP-CRYMLRPCRY-TLRPCRYTLRPCRYTLRP 246

Query: 503 C 501
           C
Sbjct: 247 C 247



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 677 RPLRLAKRPGTVRRRP-NLLS*TCR*P-RPRCEHISPPRRSSTLRKCRWTLGP 525
           RP R   RP     RP      TCR   RPR   + P  R  TLR CR+TL P
Sbjct: 126 RPCRYTLRPRYCTLRPCRYTLRTCRYTLRPRHYTLRP--RRYTLRPCRYTLRP 176



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -2

Query: 677 RPLRLAKRPGTVRRRP-NLLS*TCR*PRPRCEHISPPRRSSTLRKCRWTLGPSLTS*RNC 501
           RP R   RP     RP   +   CR     C +   P R  TLR CR+TL P   + R C
Sbjct: 203 RPCRYMLRPCCYTLRPCRYMLRPCRYTLRPCRYTLRPCRY-TLRPCRYTLRPCRYTLRPC 261



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 24/60 (40%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -2

Query: 677 RPLRLAKRPGTVRRRP-NLLS*TCR*PRPRCEHISPPRRSSTLRKCRWTLGPSLTS*RNC 501
           RP R   RP   R RP       CR     C +   P R  TLR CR+TL P  T  R C
Sbjct: 462 RPCRYMLRPCRYRLRPCGYTLRPCRYMLRPCRYTLRPCRY-TLRPCRFTLRPCRTL-RTC 519



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 24/60 (40%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -2

Query: 674 PLRLAKRPGTVRRRP-NLLS*TCR*P-RPRCEHISPPRRSSTLRKCRWTLGPSLTS*RNC 501
           P R   RP     RP      TCR   RPR   + P  R  TLR CR+TL P   + R C
Sbjct: 71  PCRYTLRPRYCTLRPCRYTLRTCRYTLRPRHYTLRP--RRYTLRPCRYTLRPCRYTLRPC 128



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 24/60 (40%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -2

Query: 674 PLRLAKRPGTVRRRP-NLLS*TCR*P-RPRCEHISPPRRSSTLRKCRWTLGPSLTS*RNC 501
           P R   RP     RP      TCR   RPR   +SP R   TL  CR+TL P   + R C
Sbjct: 29  PCRYTLRPRYCTLRPCRYTLRTCRYTLRPRRYTLSPCRY--TLSPCRYTLRPRYCTLRPC 86



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 24/60 (40%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = -2

Query: 674 PLRLAKRPGTVRRRP-NLLS*TCR*P-RPRCEHISPPRRSSTLRKCRWTLGPSLTS*RNC 501
           P R   RP     RP      TCR   RPR   + P  R  TLR CR+TL P     R C
Sbjct: 393 PCRYTLRPRCCTLRPCRYTLRTCRYALRPRHYTLIP--RRYTLRPCRYTLRPCRYMLRPC 450



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -2

Query: 677 RPLRLAKRPGTVRRRPNLLS*T-CR*PRPRCEHISPPRRSSTLRKCRWTLGPSLTS*RNC 501
           RP R   RP     RP   +   CR     C +   P R  TLR CR+TL P   + R C
Sbjct: 196 RPCRYMLRPCRYMLRPCCYTLRPCRYMLRPCRYTLRPCRY-TLRPCRYTLRPCRYTLRPC 254


>SB_9834| Best HMM Match : CXCXC (HMM E-Value=4.4)
          Length = 247

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 426 ATARPGTTSNNTAESMHTAHSSRTITVSSRCQ 521
           +T   G+TSN+   +  TA S+ T T SS CQ
Sbjct: 111 STTTSGSTSNSAVSTTSTAGSNTTTTPSSECQ 142


>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1107

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -1

Query: 675  TPPPSEAPRDSPSPTEPP 622
            TPPP+E P  +P PTEPP
Sbjct: 1033 TPPPTEPP--TPPPTEPP 1048



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
 Frame = -1

Query: 675  TPPPSEAPRD--SPSPTEPP 622
            T PP+E P D  +P PTEPP
Sbjct: 1021 TDPPTEPPTDPPTPPPTEPP 1040



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 675  TPPPSEAPRDSPSPTEPP 622
            TPPP+E P  +P PT+PP
Sbjct: 1041 TPPPTEPP--TPPPTDPP 1056


>SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74)
          Length = 483

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 675 TPPPSEAPRDSPSPTEPP 622
           T  P+ AP  SPSPT PP
Sbjct: 162 TTKPTPAPHSSPSPTPPP 179


>SB_49834| Best HMM Match : zf-AN1 (HMM E-Value=0.93)
          Length = 207

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +1

Query: 232 NKIHNKLYDTIRSRVRDENGPHLYSKLMSLFHIICVHSCDNRARSY 369
           N+  N +Y+  R R  + +   LY +L S FHII      +R RSY
Sbjct: 20  NEEKNNIYNN-RHRSPEAHHLFLYKRLRSSFHIIADDRNHDRMRSY 64


>SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16)
          Length = 678

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 669 PPSEAPRDSPSPTEPPK 619
           PPSE P+  P P EPP+
Sbjct: 568 PPSEDPKPPPPPPEPPE 584


>SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37)
          Length = 732

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -1

Query: 672 PPPSEAPRDSPSPTEP-PKLNL 610
           PPPS  P  +P+P +P PK++L
Sbjct: 178 PPPSSQPAPAPAPPQPAPKVDL 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,741,373
Number of Sequences: 59808
Number of extensions: 361072
Number of successful extensions: 1777
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1740
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)