Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_N05
(678 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g33520.3 68417.m04762 metal-transporting P-type ATPase, putat... 32 0.40
At4g33520.2 68417.m04761 metal-transporting P-type ATPase, putat... 32 0.40
At4g33520.1 68417.m04760 metal-transporting P-type ATPase, putat... 32 0.40
At4g30940.1 68417.m04393 potassium channel tetramerisation domai... 32 0.40
At2g27390.1 68415.m03306 proline-rich family protein contains pr... 30 1.6
At2g24240.1 68415.m02895 potassium channel tetramerisation domai... 30 1.6
At4g22130.1 68417.m03199 protein kinase family protein contains ... 29 3.7
At5g22560.1 68418.m02635 hypothetical protein contains Pfam prof... 28 4.9
At4g18570.1 68417.m02749 proline-rich family protein common fami... 28 4.9
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 28 4.9
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 28 6.5
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro... 28 6.5
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 28 6.5
At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family... 27 8.6
>At4g33520.3 68417.m04762 metal-transporting P-type ATPase, putative
(PAA1) nearly identical to gi:2668492; contains Pfam
heavy-metal-associated domain PF00403
Length = 949
Score = 31.9 bits (69), Expect = 0.40
Identities = 22/59 (37%), Positives = 25/59 (42%)
Frame = +2
Query: 497 HHSFFTMSNLDLRSIGTFLGSNFFLAARCARISAAVICRFSLGGSVGDGLSRGASLGGG 673
H S FT SN LRS+G + C S+ S GG G G G S GGG
Sbjct: 63 HGSRFTSSNSALRSLGAAVLPVIRHRLECLSSSSPSFRSISSGGGSGFGGYNGGSGGGG 121
>At4g33520.2 68417.m04761 metal-transporting P-type ATPase, putative
(PAA1) nearly identical to gi:2668492; contains Pfam
heavy-metal-associated domain PF00403
Length = 949
Score = 31.9 bits (69), Expect = 0.40
Identities = 22/59 (37%), Positives = 25/59 (42%)
Frame = +2
Query: 497 HHSFFTMSNLDLRSIGTFLGSNFFLAARCARISAAVICRFSLGGSVGDGLSRGASLGGG 673
H S FT SN LRS+G + C S+ S GG G G G S GGG
Sbjct: 63 HGSRFTSSNSALRSLGAAVLPVIRHRLECLSSSSPSFRSISSGGGSGFGGYNGGSGGGG 121
>At4g33520.1 68417.m04760 metal-transporting P-type ATPase, putative
(PAA1) nearly identical to gi:2668492; contains Pfam
heavy-metal-associated domain PF00403
Length = 237
Score = 31.9 bits (69), Expect = 0.40
Identities = 22/59 (37%), Positives = 25/59 (42%)
Frame = +2
Query: 497 HHSFFTMSNLDLRSIGTFLGSNFFLAARCARISAAVICRFSLGGSVGDGLSRGASLGGG 673
H S FT SN LRS+G + C S+ S GG G G G S GGG
Sbjct: 63 HGSRFTSSNSALRSLGAAVLPVIRHRLECLSSSSPSFRSISSGGGSGFGGYNGGSGGGG 121
>At4g30940.1 68417.m04393 potassium channel tetramerisation
domain-containing protein contains Pfam profile PF02214:
K+ channel tetramerisation domain
Length = 441
Score = 31.9 bits (69), Expect = 0.40
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +2
Query: 434 TTRHNKQQHRRVDAHC--TLITHHHSFFTMSNLDLRSIGTFLGSNFFLAARCARISAAVI 607
++R + + D C L H F+ N SI F GS++ L +R R I
Sbjct: 354 SSRSRLMKSKMPDEPCYPKLALHEGQLFSSMN---DSISVFCGSDWVLTSRLKRSYGGSI 410
Query: 608 CRFSLGG 628
C FS+GG
Sbjct: 411 CDFSIGG 417
>At2g27390.1 68415.m03306 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 134
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 672 PPPSEAPRDSPSPTEPPK 619
PPP E PR+ P P PP+
Sbjct: 94 PPPEEPPREPPPPPPPPE 111
>At2g24240.1 68415.m02895 potassium channel tetramerisation
domain-containing protein contains Pfam profile PF02214:
K+ channel tetramerisation domain
Length = 441
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +2
Query: 434 TTRHNKQQHRRVDAHC--TLITHHHSFFTMSNLDLRSIGTFLGSNFFLAARCARISAAVI 607
++R + + D C L H F+ N SI F G ++ L +R R I
Sbjct: 354 SSRSKLMKSKMPDEPCYPKLALHEGQLFSSMN---DSISVFCGPDWVLTSRLRRSYGGSI 410
Query: 608 CRFSLGG 628
C FS+GG
Sbjct: 411 CDFSIGG 417
>At4g22130.1 68417.m03199 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 338
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 502 QFLHDVKLGPKVHRHFLRVELLLGGEMCSHL 594
++LH+V L VHR+F +LL E+ HL
Sbjct: 144 EYLHEVCLPSIVHRNFKSANILLDEELNPHL 174
>At5g22560.1 68418.m02635 hypothetical protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 517
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = -1
Query: 672 PPPSEAPRDSPSP-TEPPKLNLQMTAAEMRAHLAAKKKFDPKK--VPMDLRSKFDIVK 508
PPP + P P T PP+ L++ + + L K KK P+D+ K ++K
Sbjct: 311 PPPPTLTQPHPKPLTPPPRRFLKLVVSARKLRLRGIKFQQKKKFETPLDITLKNGVLK 368
>At4g18570.1 68417.m02749 proline-rich family protein common family
members: At3g25690, At4g04980, At5g61090 [Arabidopsis
thaliana]
Length = 642
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 672 PPPSEAPRDSPSPTEPPKLNLQMTAAEMR 586
PPPS + P P PP +L + +A++R
Sbjct: 326 PPPSVSKAPPPPPPPPPPKSLSIASAKVR 354
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 502 QFLHDVKLGPKVHRHFLRVELLLGGEM 582
QFLH+V P VH++F ++LL G++
Sbjct: 611 QFLHEVCQPPVVHQNFKSSKVLLDGKL 637
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = -1
Query: 672 PPPSEAPRDSPSPTEPPKLN--LQMTAAEMRAHLAAKKKFDPKKVP 541
P S+ PR S SP +PPK + + T A +H + P P
Sbjct: 166 PSKSQPPRSSVSPAQPPKSSSPISHTPALSPSHATSHSPATPSPSP 211
>At4g15200.1 68417.m02329 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 600
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 672 PPPSEAPRDSPSPTEPPK 619
PPP+ AP P P PPK
Sbjct: 267 PPPAAAPPPQPPPPPPPK 284
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = -1
Query: 675 TP-PPSEAPRDSPSPTEPPKLNLQMTAAEMRAHLAAKKKFDPKKVP 541
TP PP AP+ SP P P K + H KK P P
Sbjct: 87 TPSPPPPAPKKSPPPPTPKKSPSPPSLTPFVPHPTPKKSPSPPPTP 132
>At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family
protein Common family members: At5g26070, At5g19800,
At1g72790 [Arabidopsis thaliana]
Length = 575
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -1
Query: 672 PPPSEAPRDSPSPTEPPKLNLQMTAAEMRAHLAAKKKFDPKKVPMDLRSKFDIVKK 505
PPPS P P P PP+ + T + L +K K++ M S ++ KK
Sbjct: 296 PPPSPPP---PPPPPPPQPLIAATPPRKQGTLQRRKSNAAKEIKMVFASLYNQGKK 348
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,637,749
Number of Sequences: 28952
Number of extensions: 238989
Number of successful extensions: 1225
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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