Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_N03
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 180 7e-46
07_01_0071 - 522920-523063,524125-524212,524289-524677 178 3e-45
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 103 1e-22
11_04_0056 + 12942802-12942920,12943022-12943115 56 3e-08
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 38 0.007
02_05_0024 + 25152090-25153151,25153232-25154145,25154499-251547... 32 0.45
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 28 5.5
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 28 7.2
10_01_0326 + 3574129-3574329,3575144-3575692,3575914-3576072,357... 27 9.6
05_03_0238 - 10783451-10783735,10784686-10785762 27 9.6
04_03_0148 + 11869929-11869968,11870000-11870421 27 9.6
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 180 bits (439), Expect = 7e-46
Identities = 81/152 (53%), Positives = 106/152 (69%)
Frame = -3
Query: 610 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLM 431
+V +G +V+D R H+LGRLA++IAK LL G +VVVVRCE+I +SG R K+K +
Sbjct: 1 MVSGSGVCAPRVVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYL 60
Query: 430 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNX 251
FLRKR N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+G PPP+D
Sbjct: 61 RFLRKRMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPYDRT 120
Query: 250 XXXXXXXXXXVFCLKPGRNYCHVGRLSHEIGW 155
V L+PG YC +G+LS E+GW
Sbjct: 121 KRMVIPDALKVLRLQPGHKYCLLGQLSKEVGW 152
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 178 bits (434), Expect = 3e-45
Identities = 79/152 (51%), Positives = 104/152 (68%)
Frame = -3
Query: 610 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLM 431
+V +G + +V+D R H+LGRLA+++AK LL G +VVVVRCE++ ISG R K+K +
Sbjct: 1 MVSGSGLCTRRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYL 60
Query: 430 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNX 251
FLRKR N P+ GP HFRAPS+I W+TVRGMIPHKT RG+ AL L+ +DG PPP+D
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLKAFDGVPPPYDRT 120
Query: 250 XXXXXXXXXXVFCLKPGRNYCHVGRLSHEIGW 155
V L+PG YC +G+LS E+GW
Sbjct: 121 KRMVVPDALKVLRLQPGHKYCLLGQLSKEVGW 152
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 103 bits (247), Expect = 1e-22
Identities = 44/85 (51%), Positives = 57/85 (67%)
Frame = -3
Query: 409 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXX 230
N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+ PP+D
Sbjct: 2 NTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPD 61
Query: 229 XXXVFCLKPGRNYCHVGRLSHEIGW 155
V L+PG YC +G+LS E+GW
Sbjct: 62 ALKVLRLQPGHKYCLLGQLSKEVGW 86
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/54 (44%), Positives = 32/54 (59%)
Frame = -3
Query: 316 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXVFCLKPGRNYCHVGRLSHEIGW 155
RG+ AL RL+ Y+G PPP+D V L+PG YC +G+LS E+GW
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGW 62
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 37.9 bits (84), Expect = 0.007
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 12/118 (10%)
Frame = -3
Query: 574 VIDGRGHLLGRLAAVIAKVLLEGNK------------VVVVRCEQINISGNFFRNKLKLM 431
V+D +LGRLA+ IA + N+ VVVV E++ +SG KL
Sbjct: 541 VVDATDKILGRLASTIAVHIRGKNEATYTPSVDMGAFVVVVNAEKVAVSGKKRSQKLYRR 600
Query: 430 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 257
R R P +I+ VRGM+P K G+ L+ Y G P +
Sbjct: 601 HSGRPGGMKEETFDQLQKRIPERIIEHAVRGMLP-KGRLGRRLFTHLKVYKGAEHPHE 657
>02_05_0024 +
25152090-25153151,25153232-25154145,25154499-25154709,
25154757-25154921
Length = 783
Score = 31.9 bits (69), Expect = 0.45
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = -1
Query: 534 QSSPRSFSKGTKLLWFAANKSISLATSLGTNSSLCHSCVRGAT*ILLVDLSILELHLRFY 355
Q+SP + +L WF N ++S LG C + T +DLS L + Y
Sbjct: 567 QNSPTDNTSSERLQWFRENSTVS---ELGLEPGQCKVFIESDTVGRNLDLSSLASFEQLY 623
Query: 354 GRL*EV 337
GRL E+
Sbjct: 624 GRLSEM 629
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -3
Query: 409 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 263
NV R P FR P+K + +T R I R ++T PPP
Sbjct: 652 NVRANRVPESFRKPNKGIQETARSQISSSKSATPAQTRSIKTRAPNPPP 700
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 538 AAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMS 428
A A ++ + VVVV CE+ I+G N +KL+S
Sbjct: 2515 AIAFAASAIQNSSVVVVTCEREVITGGHADNSVKLIS 2551
>10_01_0326 +
3574129-3574329,3575144-3575692,3575914-3576072,
3576349-3577543,3577626-3577762,3578052-3578242,
3578888-3579218
Length = 920
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = -2
Query: 107 RLLRELPMKRNLRGSPRMLVRRCRRRQ 27
R++ EL + RN+R +P+ML+ ++R+
Sbjct: 177 RIVEELGLARNVRLTPKMLIEAIKQRK 203
>05_03_0238 - 10783451-10783735,10784686-10785762
Length = 453
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 165 KLDGNXRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGE 46
++D RD+ ++ EDK +K A E K ++ K E
Sbjct: 181 EIDKTRRDITKQFEDKGNKLEIKMKALEGKTDKLDKSLAE 220
>04_03_0148 + 11869929-11869968,11870000-11870421
Length = 153
Score = 27.5 bits (58), Expect = 9.6
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -1
Query: 570 SMAVVICWAVWRQSSPRSF 514
S+ ++ICW VW++ + R F
Sbjct: 99 SLVLLICWMVWKERNARVF 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,184,734
Number of Sequences: 37544
Number of extensions: 385300
Number of successful extensions: 985
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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