Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_N03
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   6e-05
SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.037
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)             31   0.60 
SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34)              29   4.2  
SB_26911| Best HMM Match : Trypsin (HMM E-Value=0)                     28   7.4  
SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24)           28   7.4  
SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)                 27   9.8  
SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)                 27   9.8  
SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = -3

Query: 337 MIPHKTERGKNALRRLRTYDGCPPPFD 257
           MIPHKT++G  A+ R++ +DG PPP+D
Sbjct: 1   MIPHKTKKGTEAMNRMKVFDGVPPPYD 27


>SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
 Frame = -3

Query: 574 VIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFRNKLKLM 431
           +IDGR  + GRLA  I ++L              G+ VVV+  + I +SG  + NKL   
Sbjct: 20  LIDGRDQICGRLAGYIGQILQGKTKPIYHHAEDVGDYVVVINTKHIVLSGTKWDNKLYRH 79

Query: 430 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPF 260
                           H +  ++ILW+ V GM+P K       ++RL  ++    P+
Sbjct: 80  HTGYPGGLKEILAKDLHRKDGTRILWRAVNGMLP-KNNLRPTWMKRLYLFEDEHHPY 135


>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
          Length = 1459

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -1

Query: 570 SMAVVICWAVWRQSSPRSFSKGTKLLWFAANKSISLA 460
           SM+V +C ++W  + P  F    +L+W+  + S+S++
Sbjct: 265 SMSVSLCQSIWYHTHPSVFVSLGQLIWYNTHPSVSVS 301


>SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34)
          Length = 225

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 393 RAGFTLHLLRRNDISLSLFLKKLPEILICSQRTTTTL 503
           R G+   + + ++ ++ LFL   PE++    R TT +
Sbjct: 131 RGGYNCSVCKTSEAAMELFLNNQPEVIFIDMRDTTPI 167


>SB_26911| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 349

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 544 GPADDHGHRSLWPYC*SPSFSQRNGKASAGRI 639
           GP+ DHG +  +P    PSF      AS G++
Sbjct: 119 GPSSDHGGKDYYPITARPSFYYHMYGASMGKL 150


>SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24)
          Length = 676

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 181 LHDSNYGQVSDRRHVEQQALQHVDGYQREEGTH-HMY 288
           +H S + +V  ++H+E +A  H   Y R +  H H+Y
Sbjct: 319 IHVSVFRRVLHQKHIEVEAYNHPHVYSRVKSNHPHVY 355


>SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)
          Length = 621

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 354 HRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEILICSQRTTT 497
           H +   AL+W+G R  FTL +   + + LS  + K  + + C   ++T
Sbjct: 530 HEVWYQALRWRGERVYFTLIMPWMSRVPLSQPIPKRSDRVSCGALSST 577


>SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)
          Length = 672

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -3

Query: 616 RFVV--KMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGN 503
           R+V+  + +G +NK ++IDG   L     A   +V+++GN
Sbjct: 601 RYVISGQHSGTTNKRVIIDGNDMLSPHSVATNKRVIIDGN 640


>SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2337

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
 Frame = -3

Query: 511  EGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARG-PFHFRAPSKILWKTVRGM 335
            +G+    V+   IN+      N   ++  LR    V   R     +     + ++T+  +
Sbjct: 837  QGHSTCKVKGLHINLRTGDIVNLTSMLELLRVEGAVAEERHVTLPYTIQRNVHYRTLHTV 896

Query: 334  IPHKTER---GKNALRRLRTYDGCPPP 263
              HKT R    K   R +RTY   PPP
Sbjct: 897  PAHKTFRFVYNKRVRRGMRTYPYAPPP 923


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,638,706
Number of Sequences: 59808
Number of extensions: 429198
Number of successful extensions: 1760
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1756
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)