Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_N03
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   200   7e-52
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   200   7e-52
Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   6.5  
Z54216-3|CAA90944.2|  337|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AL033514-25|CAA22109.1|  570|Caenorhabditis elegans Hypothetical...    27   8.6  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  200 bits (488), Expect = 7e-52
 Identities = 90/148 (60%), Positives = 112/148 (75%)
 Frame = -3

Query: 595 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 416
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 415 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 236
           RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y+G P  +        
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120

Query: 235 XXXXXVFCLKPGRNYCHVGRLSHEIGWK 152
                 F L+P R +C VGRLSHE+GW+
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQ 148



 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 147 RDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTSIQA 1
           +DVV KLE KRK K       +KK+ ++   A +  +     +   I+A
Sbjct: 150 QDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEA 198


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  200 bits (488), Expect = 7e-52
 Identities = 90/148 (60%), Positives = 112/148 (75%)
 Frame = -3

Query: 595 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 416
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 415 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 236
           RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y+G P  +        
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120

Query: 235 XXXXXVFCLKPGRNYCHVGRLSHEIGWK 152
                 F L+P R +C VGRLSHE+GW+
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQ 148



 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 147 RDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTSIQA 1
           +DVV KLE KRK K       +KK+ ++   A +  +     +   I+A
Sbjct: 150 QDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEA 198


>Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical
           protein F19H8.4 protein.
          Length = 749

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 165 KLDGNXRDVVRKLEDKRKGKAVKRVAYEKKLKRI-TKDAGEKVSK 34
           K+D +  +    LE KRK  A+ R  ++ K+ +I ++D  EK+ K
Sbjct: 173 KVDSHNSEKKNLLEKKRKDLAIARKMHKLKISKILSEDHSEKMKK 217


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/48 (29%), Positives = 18/48 (37%)
 Frame = +1

Query: 166 HGTVCLHDSNYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*EHS 309
           H     H   +G V  R H E     H   +  E GTHH +     H+
Sbjct: 389 HHEHAAHHDEHG-VHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHA 435


>Z54216-3|CAA90944.2|  337|Caenorhabditis elegans Hypothetical
           protein T24H10.4 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 132 YEQHHGYFHPISWDSLPT*Q 191
           YE+H+ YF  I++D+LP  Q
Sbjct: 228 YERHYAYFKMITFDNLPAKQ 247


>AL033514-25|CAA22109.1|  570|Caenorhabditis elegans Hypothetical
           protein Y75B8A.25 protein.
          Length = 570

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -1

Query: 165 KLDGNXRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSK 34
           KLD + +D V + ED  + KA++R  + +K  +  +D  + +S+
Sbjct: 38  KLDRDFQDSVTRKEDYMREKAIRRQKHSEKFDKKFEDLVKAMSE 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,835,983
Number of Sequences: 27780
Number of extensions: 307965
Number of successful extensions: 821
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)