Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_N02
         (741 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    26   0.37 
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   4.5  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   6.0  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +1

Query: 589 LSFSIYDVCXXSISINVNFFSRRSLFNLCXHKKCPFKNKTGISSL 723
           L F+I+D        +VN  S   L NL      PF+  TG+  L
Sbjct: 179 LDFNIFDQVGSLGMFHVNM-SHNKLINLVVAPSVPFEQDTGLGGL 222


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -1

Query: 171 MFLPKHINDDMFSNETKSKSFREY 100
           +F+P+ +  D+F N+ +  + + Y
Sbjct: 330 LFVPRRVPFDLFENKKRKNNIKLY 353


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 104 SLNDLLFVSLENISSFMCFGRN 169
           +++DL+ V L + +S++  GRN
Sbjct: 237 AMSDLMIVKLSHCNSYVDGGRN 258


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,805
Number of Sequences: 336
Number of extensions: 2708
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)