Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_N02
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81127-3|CAB03388.2|  310|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z81593-11|CAI94505.2|  360|Caenorhabditis elegans Hypothetical p...    28   8.0  

>Z81127-3|CAB03388.2|  310|Caenorhabditis elegans Hypothetical
           protein T22G5.3 protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 28/108 (25%), Positives = 47/108 (43%)
 Frame = +2

Query: 164 RNI*EKIYXFTNYRPETKXRFDLFNYKLLSEDLKIRQRQN*GTFMIYQNNEFDSMKLLSY 343
           RNI  KI+  +     +K + D F   + + ++K R+ Q    ++I    + D +  +  
Sbjct: 69  RNIYWKIHKSSKPLKGSKRKIDSF--VIDNMEIKNRRHQLRDKYVIESYCDNDRIACIKI 126

Query: 344 Y*KRELLDFYLHNVLNNYNGRIEMIWSWDILRWDRTVCKSIVNFIKYF 487
                +LD +  N LN Y  R E     + + WDR      + FI YF
Sbjct: 127 --AEVMLDIFKPNQLNVYISREETDDICNFIAWDRLNQVDDLTFITYF 172


>Z81593-11|CAI94505.2|  360|Caenorhabditis elegans Hypothetical
           protein T20B3.16 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +2

Query: 377 HNVLNNYNGRI--EMIWSWDILRWDRTVCKS 463
           +N + NYN     EM+ SWD   W  T C S
Sbjct: 314 YNNIRNYNNGTCAEMLLSWDTGYWTTTECSS 344


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,311,947
Number of Sequences: 27780
Number of extensions: 237319
Number of successful extensions: 547
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)