Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_M24
         (721 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4AHV1 Cluster: Putative uncharacterized protein precur...    34   3.1  
UniRef50_Q852P1 Cluster: SEF6 protein; n=1; Volvox carteri f. na...    33   9.4  

>UniRef50_Q4AHV1 Cluster: Putative uncharacterized protein
           precursor; n=1; Chlorobium phaeobacteroides BS1|Rep:
           Putative uncharacterized protein precursor - Chlorobium
           phaeobacteroides BS1
          Length = 386

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +1

Query: 250 VFISTLSLDYLLKRQIHAQKMSIVSR-LRFEHNCVLPSRHPVLQNIIIDYYNVINPKYYT 426
           V I+ +    L   ++ AQK + VS  L F +  + PS   V QN+    YN IN  YY 
Sbjct: 6   VIIALVFWTILFPIRVEAQKKTEVSGFLEFLNTTMAPSNSAVWQNMS-GVYNRINFNYYP 64

Query: 427 SDNIKIEFRLKKN 465
             N+K +  ++ N
Sbjct: 65  VKNLKFQAGMRNN 77


>UniRef50_Q852P1 Cluster: SEF6 protein; n=1; Volvox carteri f.
           nagariensis|Rep: SEF6 protein - Volvox carteri f.
           nagariensis
          Length = 216

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 264 PQFRLLAKTTNTRSKNEYCFSLT 332
           P++ LLA+T N  S NEYCF L+
Sbjct: 81  PRYFLLAQTNNRSSTNEYCFGLS 103


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 569,816,965
Number of Sequences: 1657284
Number of extensions: 9803693
Number of successful extensions: 20165
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20165
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)