Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_M24
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    27   2.7  
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    27   3.6  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   3.6  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   8.2  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   8.2  
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    25   8.2  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   8.2  

>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 496 LTNKNKLNFLYLKYDHNVKCVLEFY*KNFI 585
           +TNK   +FLYL+ D   KC + +   NFI
Sbjct: 619 VTNKGTYDFLYLRIDFVNKCNVGYAFINFI 648


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = +1

Query: 349 VLPSRHPVLQNIIIDYYNVINPKYYTSDNIKIEFRLKKN*SKKD*VPETLTNKNKLNFLY 528
           +L  RH  +  +  +    +N K YT  + ++   ++   +K    P T+ +  KL   Y
Sbjct: 459 LLDCRHFWISFLRFELEQPLNSKNYTEHHARVSNVMEMIRNKTRLPPRTIMDLTKLYMEY 518

Query: 529 LKYDHNVKCVLEFY 570
           L +  N   VL+ Y
Sbjct: 519 LCHQSNDPSVLQEY 532


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 475 FWINFFLNEILFLCCRMCN 419
           FWI FFL ++L LC    N
Sbjct: 141 FWIVFFLGQVLSLCITATN 159


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 544  CDRTLSTKN*ACFCLLVFRGLSPFW 470
            C  T++  N AC C      +SPFW
Sbjct: 1092 CKPTIAPTNVACCCSKCNSTMSPFW 1116


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = +1

Query: 256 ISTLSLDYLLKRQIHAQKMSIVSRLRFEHNCVLPSRHPVLQNIIIDY 396
           ++  +++ LL R   A   + + RLR ++   L  R P+L+N++ID+
Sbjct: 52  LALTTVNPLLLRSSVACFETFLRRLRAQYPTWLKFRVPMLKNLVIDH 98


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -3

Query: 365 CREGKTQLCSKRKRET 318
           CR GKT LCSK  RET
Sbjct: 105 CRSGKTNLCSK-IRET 119


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +3

Query: 432  QHKNRISFKKKLIQKGLSPRNTNKQKQA*FFVLKVRSQCKMCVRILLKEFHYK 590
            Q KN +  + K IQK L   N +  KQA      V  + ++ ++ L +    K
Sbjct: 995  QDKNELEERLKEIQKELEVYNNHFMKQAELMTSNVTDESQLMLKTLREALQSK 1047


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,919
Number of Sequences: 5004
Number of extensions: 46316
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)