Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_M24
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical pr...    35   0.067
Z78417-4|CAB01685.2|  531|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AL117204-43|CAB55131.2|  917|Caenorhabditis elegans Hypothetical...    28   5.8  
Z81477-5|CAB03926.1|  334|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily a...    28   7.7  

>Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical protein
            F54F11.2 protein.
          Length = 1589

 Score = 34.7 bits (76), Expect = 0.067
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
 Frame = +1

Query: 310  MSIVSRLRFEHNCVLPSRHPVLQNIIIDYYNVINPKYYTSDNIKIEFRLKKN*SKKD*VP 489
            + +V+R   E N  LP+    L + ++DY   I  KY T DN + +F+   N +K     
Sbjct: 1060 LDVVTRYAREQNITLPAGASDLLSNVLDYEQNIAVKYSTDDNTRRQFQRSWNLTK---TS 1116

Query: 490  ETLTNKNKLNFL-YLKYDHN 546
            + +T  N ++++ YL +  N
Sbjct: 1117 DLVTKYNFMDWMTYLSHAPN 1136


>Z78417-4|CAB01685.2|  531|Caenorhabditis elegans Hypothetical
           protein C35C5.5 protein.
          Length = 531

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 370 VLQNIIIDYYNVINPKYYTSDNIKIEF 450
           +L+N++ DY   + P +  SD +K++F
Sbjct: 32  LLENLLTDYNKAVRPVHNASDALKVKF 58


>AL117204-43|CAB55131.2|  917|Caenorhabditis elegans Hypothetical
           protein Y116A8C.26a protein.
          Length = 917

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 429 RQHKNRISFKKKLIQKGLSPRNTNKQKQA*FFVLKVRSQCKMCVRILLKEFHYK 590
           R+ K R +F+ K   K LSP +   +  + FF  ++  +  +C  +L    HY+
Sbjct: 170 RKAKERTAFQAKEKDKTLSPEDLEAELLSNFFDFELEMEKSLCRDLLSTTPHYE 223


>Z81477-5|CAB03926.1|  334|Caenorhabditis elegans Hypothetical
           protein C27C7.7 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 511 KLNFLYLKYDHNVKCVLEFY 570
           K N  YL Y H +KC LE +
Sbjct: 209 KYNIQYLIYQHGIKCALELW 228


>AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 123 protein.
          Length = 655

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 536 YFKYKKLSLFLFVSVSGT*SFLD*FFFKR 450
           YF Y  + +F+F  ++GT  FL  ++F R
Sbjct: 618 YFSYTSIFVFMFFLMTGTIGFLATYYFVR 646


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,848,237
Number of Sequences: 27780
Number of extensions: 257930
Number of successful extensions: 567
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)