Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_M24
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49170.1 68418.m06086 expressed protein similar to unknown pr...    29   4.1  
At1g73080.1 68414.m08450 leucine-rich repeat transmembrane prote...    28   7.2  

>At5g49170.1 68418.m06086 expressed protein similar to unknown
           protein (gb|AAF63814.1)
          Length = 185

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 388 IDYYNVINP--KYYTSDNIKIEFRLKKN*SKKD*VPETLTNKNK 513
           I Y+ V+    K+ +S     +F+L+K  SK D +  TL NKNK
Sbjct: 27  IHYFQVLEEAKKHKSSSIDTFQFKLQKPISKDDLIRTTLHNKNK 70


>At1g73080.1 68414.m08450 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor protein kinase
           GI:1389566 from [Arabidopsis thaliana]
          Length = 1123

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +1

Query: 361 RHPVLQNIIIDYYNVINPKYYTSDNIK--IEFRLKKN*SKKD*VPETLTNKNKLNFLYL 531
           R P LQ + +DY N+  P   +  + K  +E  +  N    + +PE++ N + L  LYL
Sbjct: 169 RIPKLQVLYLDYNNLTGPIPQSIGDAKELVELSMYANQFSGN-IPESIGNSSSLQILYL 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,426,890
Number of Sequences: 28952
Number of extensions: 216014
Number of successful extensions: 431
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)