Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_M23
         (502 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25040.1 68416.m03129 ER lumen protein retaining receptor, pu...    27   5.4  
At1g20400.1 68414.m02544 myosin heavy chain-related                    27   5.4  
At5g47560.1 68418.m05871 sodium/dicarboxylate cotransporter, put...    27   9.4  
At5g17860.1 68418.m02093 cation exchanger, putative (CAX7) conta...    27   9.4  

>At3g25040.1 68416.m03129 ER lumen protein retaining receptor,
           putative / HDEL receptor, putative similar to SP|P35402
           ER lumen protein retaining receptor (HDEL receptor)
           {Arabidopsis thaliana}; contains Pfam profile PF00810:
           ER lumen protein retaining receptor
          Length = 215

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 272 TFRHWFL-LPLICFIKLVGTKFSTNNVSLFNQQ*YSETI 385
           TFRHWFL LP      L+  KF+   V L+    Y E +
Sbjct: 94  TFRHWFLVLPCFLLALLIHEKFTFLEV-LWTSSLYLEAV 131


>At1g20400.1 68414.m02544 myosin heavy chain-related
          Length = 944

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 470 NRCKNLRIKQCRGRARRLTSRFIII 396
           N C N RIKQ RG  RR     +++
Sbjct: 23  NGCVNARIKQVRGATRRCRFELVVL 47


>At5g47560.1 68418.m05871 sodium/dicarboxylate cotransporter,
           putative similar to SWISS-PROT:Q13183 renal
           sodium/dicarboxylate cotransporter [Human]{Homo sapiens}
          Length = 540

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 272 TFRHWFLLPLICFIKLVGTKFSTNNVS 352
           T  +W + P +C I    T+F++NN +
Sbjct: 424 TAPYWAIAPTVCLIAATITEFTSNNAT 450


>At5g17860.1 68418.m02093 cation exchanger, putative (CAX7) contains
           similarity to SWISS-PROT:Q9HC58 NKX3_HUMAN
           Sodium/potassium/calcium exchanger 3 precursor {Homo
           sapiens}; Ca2+:Cation Antiporter (CaCA) Family member
           PMID:11500563
          Length = 570

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 205 YDSRYSGSQTNVVVYIFN 152
           Y S YSGSQ N+++YI +
Sbjct: 360 YCSHYSGSQRNLILYIIS 377


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,859,069
Number of Sequences: 28952
Number of extensions: 148733
Number of successful extensions: 220
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)