Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_M22
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    37   2e-04
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    37   2e-04
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   6.9  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   6.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.1  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = -3

Query: 734 VLRGTGGAFVLXLYDEIKKVL 672
           +LRGTGGA VL LYDEIK +L
Sbjct: 280 ILRGTGGALVLVLYDEIKNLL 300


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = -3

Query: 734 VLRGTGGAFVLXLYDEIKKVL 672
           +LRGTGGA VL LYDEIK +L
Sbjct: 280 ILRGTGGALVLVLYDEIKNLL 300


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 26  QLIKNNNVNY*VPHTNLTSHKCQHYIISFK 115
           ++I +NN NY   + N  S K  + II+ +
Sbjct: 302 KIISSNNYNYKNYNNNYNSKKLYYNIINIE 331


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 26  QLIKNNNVNY*VPHTNLTSHKCQHYIISFK 115
           ++I +NN NY   + N  S K  + II+ +
Sbjct: 313 KIISSNNYNYKNYNNNYNSKKLYYNIINIE 342


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 633 DSVSQPLPSNHVLLDTKTTLVTYF*LNKVLYNDSIIYCFI 514
           D+V+Q   S  + L     L +Y   N  +Y D++I C +
Sbjct: 282 DAVTQIFFSYALGLGALVALGSYNKFNNNVYKDALIVCTV 321


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 633 DSVSQPLPSNHVLLDTKTTLVTYF*LNKVLYNDSIIYCFI 514
           D+V+Q   S  + L     L +Y   N  +Y D++I C +
Sbjct: 335 DAVTQIFFSYALGLGALVALGSYNKFNNNVYKDALIVCTV 374


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 611 GSGCDTESHXNYGNNSYVRF 670
           GS  D+++  N+G  S VRF
Sbjct: 587 GSTTDSQTEDNFGPLSNVRF 606


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,124
Number of Sequences: 438
Number of extensions: 3914
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)