Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_M21
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    27   3.3  
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    25   9.9  

>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +2

Query: 143 KLIHLYINKLIRSKFLRYLYNINIPTKCIIDFF---SLIIWYCLSYLHKLPTYIEVLFC* 313
           +L+H +   + R+  L+ L   N+P + +       SLI+W       K P+ +EVL C 
Sbjct: 526 ELLHPFQTNMERATKLQDLRRGNLPEEFVEQHICESSLILWMTAKDPTKRPSLLEVLNCG 585

Query: 314 YEFPTFQRKPWLEAIMA 364
              P     P +  I++
Sbjct: 586 LLLPNQVSMPNISNIVS 602


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 222 FVGIFILYKYRKNLLLINLFIYK*MSLMPTWS 127
           F GIF+ Y  RK +  +  F +   +L+ TWS
Sbjct: 251 FCGIFLDYSRRKRVWTLLPFAFGFYNLICTWS 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,831
Number of Sequences: 5004
Number of extensions: 52098
Number of successful extensions: 117
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)