Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_M21
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19560.1 68416.m02480 F-box family protein contains weak hit ...    29   2.8  
At5g23550.1 68418.m02764 expressed protein                             28   4.9  

>At3g19560.1 68416.m02480 F-box family protein contains weak hit to
           Pfam PF00646: F-box domain;; contains weak hit to
           TIGRFAM TIGR01640 : F-box protein interaction domain
          Length = 356

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
 Frame = +2

Query: 218 TKCI--IDFFSLIIWYCLSY----LHKLPTYIEVLF--C*YEFPTFQRKPWL 349
           T+CI  ID F +  WYCL Y     HK+      +F    YE  +F  K W+
Sbjct: 125 TRCIQPIDKFYIYDWYCLGYDKDKNHKILVVYSPMFGRIEYEIYSFLSKSWI 176


>At5g23550.1 68418.m02764 expressed protein
          Length = 175

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 128 DQVGIKLIHLYINKLIRSKFLR-YLYNINIPTKCIIDFFSLIIWYCLSYLHKLPTYIEVL 304
           D   I    LY+  +I + F   Y+ N  +    II  F+ +IWY LSY+    T +  +
Sbjct: 107 DPARIYATALYLASIIIALFCALYVRNKLLTLLAIILEFTGLIWYSLSYIPFARTMVSKI 166

Query: 305 F 307
           F
Sbjct: 167 F 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,258,899
Number of Sequences: 28952
Number of extensions: 232557
Number of successful extensions: 445
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)