Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_M20
         (670 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   2.3  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   4.0  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   5.2  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    22   5.2  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    22   5.2  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   9.1  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   9.1  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   9.1  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   9.1  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   9.1  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   9.1  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   9.1  

>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 96  N*KASICSSPCTSRSPGCAT 155
           N KA ICS P  ++  GC++
Sbjct: 145 NDKAGICSWPDEAKKKGCSS 164


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 117 SSPCTSRSPGCATTRGGATSRRAPCTPASDP 209
           SSP +S S   +T + G  +  +  + +S+P
Sbjct: 167 SSPASSTSSTSSTEKAGTNNNNSKSSQSSNP 197


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 181 RREVAPPRVVAHPGLLEVHGDE 116
           RR+ APP+   H  LL  + D+
Sbjct: 218 RRDTAPPQWYQHQPLLFTYTDD 239



 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 564 KVEVKIKIPEELK 526
           K+E K+++PE LK
Sbjct: 44  KIEGKVQVPEALK 56


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
 Frame = +1

Query: 274 LLQYLAVLRPLELVQQLRAQGRVEVLLDPLRDVDQHRLLSLVVRLARFLESQIIIH--YL 447
           LL  L  L  + L ++ + Q   +  +D      Q ++   +V L  F+   +II   Y 
Sbjct: 170 LLSILFSLPTVFLFEEKQVQSMPQCWID--LQTWQWKVYITLVALVLFVFPALIISACYA 227

Query: 448 TNG*FCW*NS*LLLPCDHVPV 510
                 W  S LL+P  H+P+
Sbjct: 228 VIVRTIWSKSKLLIPVGHIPI 248


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 242 PYT*DIGVSGYSCSISLY 295
           PYT ++GV GY+    LY
Sbjct: 290 PYTREMGVIGYNEVCELY 307


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 117 SSPCTSRSPGCATTRGGATSRRAPCTPASDP 209
           SSP +S S   +T + G  +  +    +S+P
Sbjct: 167 SSPASSTSSTSSTEKAGTNNNNSKSGQSSNP 197


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 117 SSPCTSRSPGCATTRGGATSRRAPCTPASDP 209
           SSP +S S   +T + G  +  +    +S+P
Sbjct: 167 SSPASSTSSTSSTEKAGTNNNNSKSGQSSNP 197


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 117 SSPCTSRSPGCATTRGGATSRRAPCTPASDP 209
           SSP +S S   +T + G  +  +    +S+P
Sbjct: 167 SSPASSTSSTSSTEKAGTNNNNSKSGQSSNP 197


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 117 SSPCTSRSPGCATTRGGATSRRAPCTPASDP 209
           SSP +S S   +T + G  +  +    +S+P
Sbjct: 167 SSPASSTSSTSSTEKAGTNNNNSKSGQSSNP 197


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 117 SSPCTSRSPGCATTRGGATSRRAPCTPASDP 209
           SSP +S S   +T + G  +  +    +S+P
Sbjct: 123 SSPASSTSSTSSTEKAGTNNNNSKSGQSSNP 153


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 117 SSPCTSRSPGCATTRGGATSRRAPCTPASDP 209
           SSP +S S   +T + G  +  +    +S+P
Sbjct: 167 SSPASSTSSTSSTEKAGTNNNNSKSGQSSNP 197


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 117 SSPCTSRSPGCATTRGGATSRRAPCTPASDP 209
           SSP +S S   +T + G  +  +    +S+P
Sbjct: 167 SSPASSTSSTSSTEKAGTNNNNSKSGQSSNP 197


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,561
Number of Sequences: 336
Number of extensions: 2275
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)