Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_M20
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 138 9e-34
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch... 28 1.1
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 28 1.4
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 27 1.8
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 27 1.8
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 27 3.2
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 26 4.3
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 26 5.6
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 7.5
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 7.5
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1... 25 7.5
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||... 25 7.5
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 9.9
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 9.9
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 25 9.9
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 138 bits (333), Expect = 9e-34
Identities = 76/196 (38%), Positives = 115/196 (58%), Gaps = 2/196 (1%)
Frame = -2
Query: 657 KDTPADSGSDQPKKKRGRLDLSIESEEQYLAKVEVKIKIPEELKVWLVDDWDVITRQQKL 478
+D D+ +++ K E EE L K KI +P+ LK+WLVDDW+ IT+ Q+L
Sbjct: 139 RDGTTDAKNEETTKPENNEKDDFE-EEPPLPKH--KISVPDVLKLWLVDDWENITKNQQL 195
Query: 477 AILPAKLTVSQIVDNYLAFKKSSKSH--NQAKESVLVDITEGIKEYFNATLGSQLLYKFE 304
+P TV + AF++S SH N+ V G+ YFN LG+ LLY+FE
Sbjct: 196 IAIPRNPTVRAAI---AAFRESKISHLNNEIDVDVFEQAMAGLVIYFNKCLGNMLLYRFE 252
Query: 303 RPQYSEILQEYPDTPMSQVYGAVHLLRLFAKMGPMLAYTALDEKSLHHVLSHIQDFLKYM 124
R QY EI Q+YPDT M +YG HL+RLF + ++ T +D +S+ +L++I++FLKY+
Sbjct: 253 RQQYLEIRQQYPDTEMCDLYGVEHLIRLFVSLPELIDRTNMDSQSIECLLNYIEEFLKYL 312
Query: 123 VTNRSTLFNLQDYGNA 76
V ++ F +++Y NA
Sbjct: 313 VLHKDEYF-IKEYQNA 327
>SPAC18G6.07c |mra1||ribosome biogenesis protein
Mra1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 630 DQPKKKRGRLDLSIESEEQYLAKVEVKIKIPEELK 526
D P K GRL + I + ++ L +V ++IP K
Sbjct: 208 DSPLNKAGRLQVYIHTAKKVLIEVNPSVRIPRTFK 242
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 27.9 bits (59), Expect = 1.4
Identities = 27/111 (24%), Positives = 45/111 (40%)
Frame = -2
Query: 603 LDLSIESEEQYLAKVEVKIKIPEELKVWLVDDWDVITRQQKLAILPAKLTVSQIVDNYLA 424
LD+++ESE Q L + K EL +D R + A L ++ +N +
Sbjct: 584 LDMAVESERQKLLLTNKRYKAQIELLNSEIDK----HRSESQAALNRRVKWENDFNNKIK 639
Query: 423 FKKSSKSHNQAKESVLVDITEGIKEYFNATLGSQLLYKFERPQYSEILQEY 271
+ K +++ES L E + + SQ+ F + Q LQ Y
Sbjct: 640 ALREEKKAWKSEESELKSSIESLISQLESIRNSQIDIAFSKNQLELKLQLY 690
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -2
Query: 285 ILQEYPDTPMSQVYGAVHLLRLFAKMGPMLAYTALDEKSLHHVLSHIQDFL 133
+++E P TP Q+ GA+ L K P+L +AL + VL + D+L
Sbjct: 301 VMEEDP-TP-EQLMGAIRRTTLARKFTPVLMGSALSNVGVQSVLDAVCDYL 349
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = -2
Query: 258 MSQVYGAVHLLRLFAKMGPMLAYTALDEKSLHHVLSHIQDFLKYMVTNRSTLFNL 94
++++ G+ ++L LFA++ L D ++L+H L I F ++N L L
Sbjct: 181 LNRLGGSEYVLHLFAQIPKALCKELTDVRTLNHPLRSIFTFCFKNISNPPNLLKL 235
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 152 DNTWWSDFSSSAVYASIG--PIFANNRSK*TAP 244
DN+WW D S+S IG +F ++R K ++P
Sbjct: 180 DNSWWEDPSNSYWKTVIGSREMFEDSRKKTSSP 212
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 26.2 bits (55), Expect = 4.3
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = -2
Query: 450 SQIVDNYLAFKKSSKSHNQAKESVLVD-ITEGIKEYFNATLGSQLLYKFERPQYSEILQE 274
SQ N LAF + K+ + +++ L E + G++L YK + S+ +
Sbjct: 257 SQTSKNLLAFNDAQKADSNNRDTSLKSHFVEPRTQALRP--GARLTYKLREARSSKRGES 314
Query: 273 YPDTPMSQVYGAVHLLRLFAKMGPMLAYTALDE 175
P + + + LL+LF K +LA L E
Sbjct: 315 TPQSFREEDNNLMELLKLFGKGVYLLAQYKLRE 347
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = -2
Query: 600 DLSIESEEQYLAKVEVKIKI---PEELKVWLVDD 508
DLSI S ++LAKV + I PE K+ +VD+
Sbjct: 623 DLSITSATEFLAKVATFLPIKQRPEVSKISIVDE 656
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 498 ITRQQKLAILPAKLTVSQIVDNYLAFKKSSKSHNQAKESV 379
+ ++K A L K +SQI L F++ K+H+ AK+ V
Sbjct: 456 LENEKKAAKLIEKDLLSQISHVKLQFEQQIKAHHYAKDQV 495
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -2
Query: 459 LTVSQIVDNYLAFKKSSKSHNQAKESVLVDITEGIKEYFNATLGSQLLYK 310
L++ I N F + KS N+A ES +VD+ + E + ++LYK
Sbjct: 21 LSIKSIPSNEKNFS-TEKSENEASESHVVDVVKDPFEQYTPE-EQEILYK 68
>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 486
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = -1
Query: 223 VVRENGSDAGVHGARREVAP---PRVVAHPGLLEVHGDEQIDAFQ 98
++ E G+HG +RE+ P + H LE+H + +Q
Sbjct: 379 LMHEELKQVGIHGTKREITDILYPHSIGHEIGLEIHDCSTNNGYQ 423
>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 322
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/63 (23%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = -2
Query: 579 EQYLAKVEVKI--KIPEELKVWLVDDWDVITRQQKLAILPAKLTVSQIVD--NYLAFKKS 412
E+ L+K K+ K ++ ++++ + ++ L +LP LTV + ++ NY +F+ +
Sbjct: 19 EEDLSKTRAKVNEKFTNIVRERMLEELSLQNKEASLEVLPPTLTVEEELELVNYYSFQLN 78
Query: 411 SKS 403
+ S
Sbjct: 79 ALS 81
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -1
Query: 232 LAAVVRENGSDAGVHGARREVAPPRVVAHPGL 137
L+ + +EN AG H ARR +AP V A GL
Sbjct: 1343 LSQLAQENWIHAG-HDARRYIAPLSVAAAWGL 1373
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -2
Query: 654 DTPADSGSDQPKKKRGRLDLSIESEEQYLAK 562
+TPA + + +PKKKRG ++ SE + L +
Sbjct: 1037 ETPALTLNGKPKKKRGPAPDTLTSEHRSLLR 1067
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 624 PKKKRGRLDLSIESEEQYLAKVEVKIKIPEELK 526
P + +LDL IES E +L K E + K E K
Sbjct: 264 PAQPPSKLDLEIESGEYFLKKEEKERKKRAEKK 296
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,160,323
Number of Sequences: 5004
Number of extensions: 38644
Number of successful extensions: 136
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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