Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_M20
(670 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0028 - 19393700-19393899,19394058-19394116,19394437-193945... 105 4e-23
04_01_0003 + 79564-79698,79879-79956,81025-81388,82399-82437,825... 99 3e-21
05_03_0659 - 16715437-16715520,16715607-16715714,16715788-167158... 32 0.48
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 30 1.9
03_02_0574 + 9575496-9575517,9575636-9576418,9576754-9577163,957... 29 4.4
01_05_0569 + 23343861-23344751,23344841-23344984,23345071-233453... 29 4.4
11_01_0576 - 4608393-4609021,4610790-4610889 28 5.9
10_07_0012 - 11791524-11791957,11792014-11792108,11792163-117922... 28 5.9
07_01_0457 - 3468419-3468585,3469674-3469842,3470339-3470384,347... 28 5.9
06_03_1507 - 30646168-30646254,30646350-30646490,30648109-306482... 28 5.9
02_04_0469 - 23178589-23178755,23179529-23179697,23179836-231799... 28 5.9
01_05_0738 + 24788278-24788521,24789192-24789510,24789888-247899... 28 5.9
09_04_0136 + 14972687-14973901 28 7.7
>11_06_0028 -
19393700-19393899,19394058-19394116,19394437-19394521,
19395305-19395474,19397534-19397613,19398288-19398392,
19399268-19399308,19399400-19399438,19400473-19400818,
19401762-19401815,19402249-19402350
Length = 426
Score = 105 bits (251), Expect = 4e-23
Identities = 63/173 (36%), Positives = 96/173 (55%)
Frame = -2
Query: 618 KKRGRLDLSIESEEQYLAKVEVKIKIPEELKVWLVDDWDVITRQQKLAILPAKLTVSQIV 439
KKR E +E+ ++ P LK LVDDW+ +T+ KL LP TV I+
Sbjct: 184 KKRKSQPGGTEEKERKSSESLFMSHFPSTLKKQLVDDWEFVTQLGKLVKLPRSPTVDDIL 243
Query: 438 DNYLAFKKSSKSHNQAKESVLVDITEGIKEYFNATLGSQLLYKFERPQYSEILQEYPDTP 259
YL + +K N+ +S +I +G++ YF+ L + LLYK ER QYSE ++ D
Sbjct: 244 KKYLEHR--TKKDNKINDSY-AEILKGLRCYFDKALPAMLLYKKERQQYSEEVKG--DVS 298
Query: 258 MSQVYGAVHLLRLFAKMGPMLAYTALDEKSLHHVLSHIQDFLKYMVTNRSTLF 100
S +YGA HLLRLF K+ +LA ++E +L+ + + D LK++ N+S+ F
Sbjct: 299 PSTIYGAEHLLRLFVKLPELLASVNMEEDALNKLQQKLLDILKFLQKNQSSFF 351
>04_01_0003 +
79564-79698,79879-79956,81025-81388,82399-82437,
82561-82601,83258-83362,83914-83919,84044-84123,
86744-86913,87664-87748,88067-88125,88451-88464
Length = 391
Score = 99.1 bits (236), Expect = 3e-21
Identities = 61/175 (34%), Positives = 98/175 (56%), Gaps = 2/175 (1%)
Frame = -2
Query: 618 KKRGRLDLSIESEEQYLAKVEVKIKIPEELKVWLVDDWDVITR--QQKLAILPAKLTVSQ 445
KKR E +E+ ++ P LK LVDDW+ +T+ ++KL LP TV
Sbjct: 209 KKRKSQPGGTEEKERKSSESLFMSHFPSTLKKQLVDDWEFVTQLGKEKLVKLPRSPTVDD 268
Query: 444 IVDNYLAFKKSSKSHNQAKESVLVDITEGIKEYFNATLGSQLLYKFERPQYSEILQEYPD 265
I+ YL + +K N+ +S +I +G++ YF+ L + LLYK E+ QY+E ++ D
Sbjct: 269 ILKKYLEHR--TKKDNKINDSY-AEILKGLRCYFDKALPAMLLYKKEQQQYTEEVKG--D 323
Query: 264 TPMSQVYGAVHLLRLFAKMGPMLAYTALDEKSLHHVLSHIQDFLKYMVTNRSTLF 100
S +YGA HLLRLF K+ +LA ++E +L+ + + D LK++ N+S+ F
Sbjct: 324 VSPSIIYGAEHLLRLFVKLPELLASVNMEEDALNKLQQKLLDILKFLQKNQSSFF 378
>05_03_0659 -
16715437-16715520,16715607-16715714,16715788-16715871,
16715963-16716095,16717051-16717118,16717528-16717599,
16717771-16717843,16718038-16718057
Length = 213
Score = 31.9 bits (69), Expect = 0.48
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +1
Query: 259 RGVGILLQYLAVLRPLELVQQLRAQGRVEVLLDPLR 366
R GILL + A++R + ++QQ + Q R+++L D R
Sbjct: 155 RAAGILLPFYAIMRMVRMIQQGQRQFRLQLLQDQRR 190
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 114 CSSPCTSRSPGCATTRGGATSRRAPCTPAS 203
CS C +R GC + SR+ PC AS
Sbjct: 479 CSKSCKNRFRGCHCAKSQCRSRQCPCFAAS 508
>03_02_0574 +
9575496-9575517,9575636-9576418,9576754-9577163,
9577246-9578079
Length = 682
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 196 GVHGARREVAPPRVVAHPGLLEVHGDEQID 107
G G +++PPR V PGL+ H +++D
Sbjct: 25 GPGGPALDLSPPRAVRRPGLVMSHSGKRLD 54
>01_05_0569 +
23343861-23344751,23344841-23344984,23345071-23345309,
23346096-23346185,23346617-23346644
Length = 463
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 499 HVPVVNEPNLQFFGYFDLNFY 561
HV ++N P L+ GYFD+ +
Sbjct: 267 HVKIINAPRLKVLGYFDVGLH 287
>11_01_0576 - 4608393-4609021,4610790-4610889
Length = 242
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 140 SWMCDNT-WWSDFSSSAVYASIGPIFANNRS 229
SW C T WW +S A +GP++ + ++
Sbjct: 4 SWWCYCTVWWGAYSKMATCMQVGPVWLDGQA 34
>10_07_0012 -
11791524-11791957,11792014-11792108,11792163-11792226,
11792327-11792591,11792670-11793127,11793271-11793592
Length = 545
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 92 CKLKSVDLFVTMYFKKSWMCDNTWWSDFSSSAVYASIG 205
CK+++ + M + + N +WS SS A YA G
Sbjct: 15 CKMQNSKFYWDMQLDEDGVVKNIFWSHASSQAEYADFG 52
>07_01_0457 -
3468419-3468585,3469674-3469842,3470339-3470384,
3470671-3470753,3471395-3471474,3472320-3472428,
3472667-3472735,3472874-3472924,3473059-3473184,
3473312-3473435,3473617-3473672,3473790-3473854,
3474438-3474513,3475050-3475108,3475275-3475365,
3475490-3475990
Length = 623
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = -1
Query: 265 HPDVSGVRRRSLAAVVRENGSDAGVHGARREVAPPRVVAHPGLLEVHGDEQIDAFQFT 92
HP+ R R++AA + + AG+ ++ + PPR + LL VH + ID+ + T
Sbjct: 225 HPERPD-RLRAIAASL----AAAGIFPSKCVMVPPREITKEELLRVHTSDHIDSVEQT 277
>06_03_1507 -
30646168-30646254,30646350-30646490,30648109-30648202,
30648445-30648509,30648934-30649176,30649442-30649499,
30649957-30650037,30650323-30650533,30650975-30651141,
30651216-30651268,30651600-30651681,30651765-30651914,
30652027-30652111,30652189-30652393,30652502-30652573,
30652911-30653456
Length = 779
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 129 TSRSPGCATTRGGATSRRAPCTPASDP 209
T S + T RR PCTP SDP
Sbjct: 44 TRSSSSASATPNSKRPRRPPCTPESDP 70
>02_04_0469 -
23178589-23178755,23179529-23179697,23179836-23179919,
23180495-23180647,23180798-23180950,23182488-23182589
Length = 275
Score = 28.3 bits (60), Expect = 5.9
Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 14/129 (10%)
Frame = -2
Query: 591 IESEEQYLAKVEVKIKIPEELKVWLVDDWDVITRQQKLAILPA---KLTVSQIVDNYLAF 421
++ +++ A + +K K +E + VD W + QQ I A K + A
Sbjct: 50 VQQKKKDRALIALKKKKAQEELLKQVDTWQMNVEQQLSDIELASKQKAVFDSLKAGNAAL 109
Query: 420 KKSSKSHNQAKESVLVDITEGIKEY---FNATLGSQL--------LYKFERPQYSEILQE 274
K N L+D T K Y NA LG QL + +FE + ++
Sbjct: 110 KSIQNEINIDDVQKLMDDTAEAKAYQDEINAALGEQLSAEDEEAVMAEFENLEAQLAVES 169
Query: 273 YPDTPMSQV 247
PD P+++V
Sbjct: 170 LPDAPVTEV 178
>01_05_0738 +
24788278-24788521,24789192-24789510,24789888-24789946,
24790235-24790281
Length = 222
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = -2
Query: 564 KVEVKIKIPEELKVWLVD-DWDVITRQQKLAILPAKLTVSQIVDNYLA 424
K++ +I + + ++LVD D D++ R+ LA + KL +S++ DN+ A
Sbjct: 100 KMKRRILVITDFALYLVDPDADILKRRIALAAVD-KLCISKLSDNFFA 146
>09_04_0136 + 14972687-14973901
Length = 404
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -1
Query: 259 DVSGVRRRSLAAVVRENGSDAGV-HGARREVAPPRVVAHPGLLEVH 125
DV R ++ V ++ AG+ +RE+A ++V+HP ++E+H
Sbjct: 30 DVRTGRAVAMKVVSKDKVERAGMAEQIKREIAVMKMVSHPSVVELH 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,110,004
Number of Sequences: 37544
Number of extensions: 260402
Number of successful extensions: 1106
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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