Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_M19
(585 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) / ... 173 7e-44
At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloropla... 165 3e-41
At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/z... 162 1e-40
At1g12520.1 68414.m01449 superoxide dismutase copper chaperone, ... 61 5e-10
At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger) fa... 33 0.14
At5g43450.1 68418.m05312 2-oxoglutarate-dependent dioxygenase, p... 31 0.75
At3g26130.1 68416.m03260 glycosyl hydrolase family 5 protein / c... 29 3.0
At5g42820.2 68418.m05216 U2 snRNP auxiliary factor small subunit... 28 4.0
At5g42820.1 68418.m05215 U2 snRNP auxiliary factor small subunit... 28 4.0
At5g06020.1 68418.m00667 self-incompatibility protein-related si... 28 4.0
At4g24265.1 68417.m03482 expressed protein 28 4.0
At3g42580.1 68416.m04420 Ulp1 protease family protein contains P... 28 4.0
At4g17410.1 68417.m02607 expressed protein 28 5.3
At3g10380.1 68416.m01244 exocyst complex component-related ident... 27 7.0
At2g37980.1 68415.m04662 expressed protein similar to axi 1 [Nic... 27 7.0
At3g08530.1 68416.m00990 clathrin heavy chain, putative similar ... 27 9.2
>At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) /
copper/zinc superoxide dismutase (CSD1) identical to
SWISS-PROT: P24704
Length = 152
Score = 173 bits (421), Expect = 7e-44
Identities = 79/150 (52%), Positives = 102/150 (68%), Gaps = 1/150 (0%)
Frame = -2
Query: 473 SRAIAVL-STETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGS 297
++ +AVL S+E + G I FTQ DG V G ++GL PG +GFHVH GD + GC+STG
Sbjct: 2 AKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGP 61
Query: 296 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 117
HFNP+ K HG P D NRH GDLGN+ ++ + + D QI L+GP+ I+GRAVV+H
Sbjct: 62 HFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHAD 121
Query: 116 ADDYGKSDHPDSRKTGNAGGRVACGVIGMR 27
DD GK H S TGNAGGRVACG+IG++
Sbjct: 122 PDDLGKGGHELSLATGNAGGRVACGIIGLQ 151
>At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloroplast
(SODCP) / copper/zinc superoxide dismutase (CSD2)
identical to GP:3273753:AF061519
Length = 216
Score = 165 bits (400), Expect = 3e-41
Identities = 76/148 (51%), Positives = 98/148 (66%), Gaps = 1/148 (0%)
Frame = -2
Query: 470 RAIAVLS-TETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSH 294
+A+AVL T + G +T TQ G V ITGL PG +GFH+HE GD + GC+STG H
Sbjct: 66 KAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPH 125
Query: 293 FNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKA 114
FNP + HG P D RH GDLGN+ + + + +VD+QI L+GP+ ++GRA V+HE
Sbjct: 126 FNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELK 185
Query: 113 DDYGKSDHPDSRKTGNAGGRVACGVIGM 30
DD GK H S TGNAGGR+ACGVIG+
Sbjct: 186 DDLGKGGHELSLTTGNAGGRLACGVIGL 213
>At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/zinc
superoxide dismutase (CSD3) identical to copper/zinc
superoxide dismutase GI:3273755
Length = 164
Score = 162 bits (394), Expect = 1e-40
Identities = 73/149 (48%), Positives = 99/149 (66%), Gaps = 1/149 (0%)
Frame = -2
Query: 470 RAIAVLSTET-IRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSH 294
RA+A+++ + +RG + F Q G HV G I+GL PG +GFH+H GD + GC+STG H
Sbjct: 9 RAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPH 68
Query: 293 FNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKA 114
FNP ++ HG PN+ RH GDLGN++ N + I + D I LSG + I+GRAVV+H
Sbjct: 69 FNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHADP 128
Query: 113 DDYGKSDHPDSRKTGNAGGRVACGVIGMR 27
DD GK H S+ TGNAG RV CG+IG++
Sbjct: 129 DDLGKGGHKLSKSTGNAGSRVGCGIIGLQ 157
>At1g12520.1 68414.m01449 superoxide dismutase copper chaperone,
putative similar to copper chaperone for superoxide
dismutase [Homo sapiens] gi|2431868|gb|AAC51764
Length = 254
Score = 61.3 bits (142), Expect = 5e-10
Identities = 40/122 (32%), Positives = 62/122 (50%)
Frame = -2
Query: 473 SRAIAVLSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSH 294
S A+A I G + F QV ++ TGL PG + + ++E GDL+ G STGS
Sbjct: 96 SAAVAEFKGPDIFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSL 155
Query: 293 FNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKA 114
+NP G +GDLG + D+N + +++ ++ +IGRAVV++ K
Sbjct: 156 YNPFQDQTG-----TEPLGDLGTLEADKNGEAFYSGKKEKLKVA---DLIGRAVVVY-KT 206
Query: 113 DD 108
DD
Sbjct: 207 DD 208
>At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 226
Score = 33.1 bits (72), Expect = 0.14
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Frame = -2
Query: 404 GKVHVQGGITGLPPGEYGFHVHEKGDLS--GGCVSTG---SHFNPEHKDHGHPNDVNRHV 240
G V + GL P + H H D + G S G NP H H H + RH
Sbjct: 139 GNVTLSAAFGGLIPSLFNLHFHGFPDAAMYGAAASGGFPHGFSNPFHGGHSHMHSYQRHT 198
Query: 239 GDLGNVVFDENHYSRIDLV 183
G G ++H+ RI L+
Sbjct: 199 GRQG----QQDHHLRILLL 213
>At5g43450.1 68418.m05312 2-oxoglutarate-dependent dioxygenase,
putative similar to 2A6 (GI:599622) and tomato ethylene
synthesis regulatory protein E8 (SP|P10967)
Length = 362
Score = 30.7 bits (66), Expect = 0.75
Identities = 15/40 (37%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Frame = +3
Query: 324 QVAFLMHV-KAIFTRRQPSD-TPLNVDLPILNLGERDVAS 437
+V + HV +I + +PSD + LN+ +PI++LG+R+ +S
Sbjct: 34 EVPSMFHVPSSILSNNRPSDISGLNLTVPIIDLGDRNTSS 73
>At3g26130.1 68416.m03260 glycosyl hydrolase family 5 protein /
cellulase family protein contains Pfam profile: PF00150
cellulase (glycosyl hydrolase family 5)
Length = 551
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 517 PRSLWRRLITASPRRLAPLPF 455
PRS W +L+T++ RR P PF
Sbjct: 514 PRSQWFKLVTSTRRRSRPKPF 534
>At5g42820.2 68418.m05216 U2 snRNP auxiliary factor small subunit,
putative strong similarity to U2 snRNP auxiliary factor,
small subunit [Oryza sativa] GI:3850816
Length = 283
Score = 28.3 bits (60), Expect = 4.0
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Frame = -1
Query: 276 GPRSSERC-QPSRRRPWKRGL*REPLQ-QDRPGRRPDLAIGSARHHRQGGGAPRES**LW 103
G RS R P R+R R R ++ +DR G + S RH R GGG R
Sbjct: 195 GSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHDRDGGGRRRHGSPKR 254
Query: 102 QE*PSGLQEDRQRWRSSRLRCHRNERE 22
P ++E + R +R+ ER+
Sbjct: 255 SRSPRNVREGSEE-RRARIEQWNRERD 280
>At5g42820.1 68418.m05215 U2 snRNP auxiliary factor small subunit,
putative strong similarity to U2 snRNP auxiliary factor,
small subunit [Oryza sativa] GI:3850816
Length = 283
Score = 28.3 bits (60), Expect = 4.0
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Frame = -1
Query: 276 GPRSSERC-QPSRRRPWKRGL*REPLQ-QDRPGRRPDLAIGSARHHRQGGGAPRES**LW 103
G RS R P R+R R R ++ +DR G + S RH R GGG R
Sbjct: 195 GSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHDRDGGGRRRHGSPKR 254
Query: 102 QE*PSGLQEDRQRWRSSRLRCHRNERE 22
P ++E + R +R+ ER+
Sbjct: 255 SRSPRNVREGSEE-RRARIEQWNRERD 280
>At5g06020.1 68418.m00667 self-incompatibility protein-related
similar to self-incompatibility [Papaver rhoeas]
GI:3097260
Length = 151
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 440 IRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSG 318
IRG +T V++ ++ G + GFH+H++G+L G
Sbjct: 42 IRGPLTRITVKNNNDYLLGIHCKSKDDDLGFHIHKEGELYG 82
>At4g24265.1 68417.m03482 expressed protein
Length = 140
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 10 CNLSLSLIPMTPQATRPPALPVFLESGWSLLP*-SSAFSWSTTALP 144
C S + + + + T PP LP + + SL P +S+F W+T LP
Sbjct: 27 CEYSSTAVAVLVEPTAPP-LPYWFDETRSLCPPETSSFPWTTHHLP 71
>At3g42580.1 68416.m04420 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 903
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 528 NIPGRDRSGDGSSRLHHAVS 469
N+PG D G+ S++ HH VS
Sbjct: 404 NVPGNDGDGEVSAKKHHTVS 423
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -2
Query: 434 GNITFTQVQDGKVHVQGGITGLPPGEYGFH 345
GN F Q G VQ G G+ PG GFH
Sbjct: 415 GNQYFNGFQPGFNGVQHGFNGVQPGFNGFH 444
>At3g10380.1 68416.m01244 exocyst complex component-related identical
to Probable exocyst complex component Sec8
(Swiss-Prot:Q93YU5) [Arabidopsis thaliana]; weak
similarity to Exocyst complex component Sec8 (rSec8)
(Swiss-Prot:Q62824) [Rattus norvegicus]
Length = 1053
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 552 ENKNAASTNIPGRDRSGDGSSRLHHAVS 469
E N N+PGRD D SRL +S
Sbjct: 1025 EYSNLLKVNVPGRDTPSDAQSRLLEILS 1052
>At2g37980.1 68415.m04662 expressed protein similar to axi 1
[Nicotiana tabacum] GI:559921; contains Pfam profile
PF03138: Plant protein family
Length = 638
Score = 27.5 bits (58), Expect = 7.0
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = -2
Query: 476 PSRAIAVLSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGS 297
PS + +T T+ I+ + DG+ +QGG P S G S+GS
Sbjct: 36 PSISSDYCNTNTVNIAIS-PDIDDGETGLQGGACSSPS-------------SIGSSSSGS 81
Query: 296 HFNPEHKDHGHP 261
H++ +H H HP
Sbjct: 82 HYHHDHHYHHHP 93
>At3g08530.1 68416.m00990 clathrin heavy chain, putative similar to
Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
sapiens]
Length = 1703
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 254 VNRHVGDLGNVVFDENHYSRIDLVDDQISLSGP 156
V R GDL + V DEN+ R L+D +S + P
Sbjct: 962 VERMDGDLWDKVLDENNDYRRQLIDQVVSTALP 994
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,073,203
Number of Sequences: 28952
Number of extensions: 295037
Number of successful extensions: 787
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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