Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_M17
(311 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83128-1|CAB05635.1| 92|Caenorhabditis elegans Hypothetical pr... 113 2e-26
Z77131-1|CAB00854.1| 91|Caenorhabditis elegans Hypothetical pr... 107 2e-24
AF098986-5|AAC67426.1| 671|Caenorhabditis elegans Hypothetical ... 31 0.17
U41275-2|AAA82465.1| 438|Caenorhabditis elegans Hypothetical pr... 31 0.22
Z92777-6|CAE17682.1| 353|Caenorhabditis elegans Hypothetical pr... 28 1.2
AF039049-1|AAB94253.1| 299|Caenorhabditis elegans Serpentine re... 27 2.8
L23646-5|ABD94102.1| 145|Caenorhabditis elegans Hypothetical pr... 27 3.6
L23646-4|AAA28039.1| 152|Caenorhabditis elegans Hypothetical pr... 27 3.6
U41554-3|AAA83298.2| 745|Caenorhabditis elegans Nematode astaci... 25 8.4
>Z83128-1|CAB05635.1| 92|Caenorhabditis elegans Hypothetical
protein W01D2.1 protein.
Length = 92
Score = 113 bits (272), Expect = 2e-26
Identities = 48/87 (55%), Positives = 61/87 (70%)
Frame = -3
Query: 273 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 94
MTKGT +FGK+ K+HTLC+RCG+SS+HIQK +CA CGYP AK R+Y+W K+
Sbjct: 1 MTKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCASCGYPDAKKRTYNWGAKSIRRRTTG 60
Query: 93 XXRMRHLKIVRRRFRNGFKEGKPTPPK 13
R RHL+ V RFRNGF+EG P+
Sbjct: 61 TGRTRHLRDVNARFRNGFREGTTPKPR 87
>Z77131-1|CAB00854.1| 91|Caenorhabditis elegans Hypothetical
protein C54C6.1 protein.
Length = 91
Score = 107 bits (256), Expect = 2e-24
Identities = 46/85 (54%), Positives = 58/85 (68%)
Frame = -3
Query: 273 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 94
MTKGT +FGK+ K+HTLC+RCG+SS+HIQK +CA CGY AK R+Y+W K+
Sbjct: 1 MTKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCASCGYQDAKKRTYNWGAKSIRRRTTG 60
Query: 93 XXRMRHLKIVRRRFRNGFKEGKPTP 19
R RHL+ V RFRNGF+ P P
Sbjct: 61 TGRTRHLRDVNARFRNGFRGTTPKP 85
>AF098986-5|AAC67426.1| 671|Caenorhabditis elegans Hypothetical
protein C36C9.4 protein.
Length = 671
Score = 31.1 bits (67), Expect = 0.17
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 255 SFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAA 148
++ K TH C +CG+ + + KC CG P A
Sbjct: 93 TYNKNNFSTHHFCNKCGKVAQN--SKKCKHCGGPVA 126
>U41275-2|AAA82465.1| 438|Caenorhabditis elegans Hypothetical
protein T25D1.2 protein.
Length = 438
Score = 30.7 bits (66), Expect = 0.22
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 255 SFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAA 148
++ K TH C +CG+ + + KC CG P A
Sbjct: 165 TYNKNNFSTHHFCNKCGKVAQN--SKKCKYCGGPVA 198
>Z92777-6|CAE17682.1| 353|Caenorhabditis elegans Hypothetical
protein C17H1.9 protein.
Length = 353
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = -1
Query: 242 AEIRPIRYAEDVVDRH---ITFKNQNAPNVDILQQNYDP 135
A+++ I+Y D +++H + F+NQ + L+ N DP
Sbjct: 230 ADLKKIKYTSDEIEKHKSKLEFRNQQLESSRTLEINADP 268
>AF039049-1|AAB94253.1| 299|Caenorhabditis elegans Serpentine
receptor, class x protein68 protein.
Length = 299
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = +3
Query: 162 HIGRILIFECDMTIYHIFCITYGSYFGAYRSLRYPS 269
H G +++F +++++ F I+ +F + L+Y S
Sbjct: 77 HCGFVILFCYELSVFTHFAISINRFFAVWMPLKYES 112
>L23646-5|ABD94102.1| 145|Caenorhabditis elegans Hypothetical
protein F44E2.6b protein.
Length = 145
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -3
Query: 300 LFRIVK-SDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPA 151
++R+ + S T T F K +C CG ++ A CG+PA
Sbjct: 31 VYRVARESGTETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGWPA 81
>L23646-4|AAA28039.1| 152|Caenorhabditis elegans Hypothetical
protein F44E2.6 protein.
Length = 152
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -3
Query: 300 LFRIVK-SDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPA 151
++R+ + S T T F K +C CG ++ A CG+PA
Sbjct: 38 VYRVARESGTETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGWPA 88
>U41554-3|AAA83298.2| 745|Caenorhabditis elegans Nematode astacin
protease protein38 protein.
Length = 745
Score = 25.4 bits (53), Expect = 8.4
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -1
Query: 305 NCFFGLSRVTR*RRVPQASVSAEIRPIRYAEDVVDRHITFKNQNAPNV-DILQQNYDPTT 129
+CF L + RVP+AS R + D +RH T ++ V D +Q+N P T
Sbjct: 14 SCFCCLLIFSSAARVPKASKKHLARVKQLLNDEAERHNTLIQSDSVTVFDDIQRN--PNT 71
Query: 128 G 126
G
Sbjct: 72 G 72
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,252,951
Number of Sequences: 27780
Number of extensions: 132324
Number of successful extensions: 296
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -