Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_M16
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48459| Best HMM Match : B12-binding_2 (HMM E-Value=3.3)            194   8e-50
SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)                29   3.0  
SB_58371| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_32850| Best HMM Match : GRP (HMM E-Value=0.089)                     28   6.8  
SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   9.0  

>SB_48459| Best HMM Match : B12-binding_2 (HMM E-Value=3.3)
          Length = 115

 Score =  194 bits (472), Expect = 8e-50
 Identities = 88/114 (77%), Positives = 100/114 (87%)
 Frame = -2

Query: 370 VLVDLTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGR 191
           VLVD+TDGGL+YTFECIGNV TMR ALEACHKGWG SVIIGVAA G+EISTRPFQLVTGR
Sbjct: 1   VLVDMTDGGLDYTFECIGNVHTMRQALEACHKGWGESVIIGVAAGGQEISTRPFQLVTGR 60

Query: 190 TWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGK 29
            WKGTAFGGYKS + VP+LV++YL  K+ +DEFVTHN+ L +INEAF LMH G+
Sbjct: 61  VWKGTAFGGYKSGDGVPQLVEDYLAGKVMVDEFVTHNMGLDKINEAFDLMHRGE 114


>SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
          Length = 197

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
 Frame = -1

Query: 254 HWC--SCCWRRDQHSSIPTCYRSHLEGNSFWRLQK---*RKCTKACR*VLGEEAAFRRIC 90
           H C  +C WR D+ + I TC     +    WRL +      C   CR  +  +A   R C
Sbjct: 126 HTCKSTCRWRLDRQADIHTC-----KSTCRWRLDRQADIHTCKSTCRWRINRQADIHR-C 179

Query: 89  HSQCAAEGDQ 60
            S C  + D+
Sbjct: 180 KSTCRWQLDR 189


>SB_58371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
 Frame = -2

Query: 304 MRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVT--GRTWKGTAFGGYKSRE---SVP 140
           ++ AL++C        I  V A  +E+  + F+L++    T    A  G + +E   S  
Sbjct: 38  LQEALQSCSNN-----ISRVQARADELEAKNFELLSKIAETEDQLAETGLRKKEAEESYK 92

Query: 139 KLVDEYLEKKLPLDEFVTHNVP-LKEINEA-FHLMHAG 32
           +LVDE    +  L++  THN   LK I E   HL+  G
Sbjct: 93  RLVDENQSLESRLEQETTHNSELLKRITETEKHLVEIG 130


>SB_32850| Best HMM Match : GRP (HMM E-Value=0.089)
          Length = 676

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
 Frame = -2

Query: 304 MRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVT--GRTWKGTAFGGYKSRE---SVP 140
           ++ AL++C        I  V A  +E+  + F+L++    T    A  G + +E   S  
Sbjct: 38  LQEALQSCSNN-----ISRVQARADELEAKNFELLSKIAETEDQLAETGLRKKEAEESYK 92

Query: 139 KLVDEYLEKKLPLDEFVTHNVP-LKEINEA-FHLMHAG 32
           +LVDE    +  L++  THN   LK I E   HL+  G
Sbjct: 93  RLVDENQSLESRLEQETTHNSELLKRITETEKHLVEIG 130


>SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 19/70 (27%), Positives = 28/70 (40%)
 Frame = +2

Query: 56  LIDLLQRHIVSDKFV*RQLLLQVLIYKLWYTFSTFVTSKSCSLPGATCNKLEWTSADLFS 235
           LI   +RH +   F     L+  + YK W  FS  +       P  TC        D+FS
Sbjct: 583 LIHRKERHDLERAF---HCLICGVTYKSWRPFSYHLFQAHSDTPPITCPHCPKKFHDIFS 639

Query: 236 SSSYTNDH*H 265
             ++  +H H
Sbjct: 640 FDNHQKEHRH 649


>SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 549

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 23/129 (17%), Positives = 50/129 (38%), Gaps = 1/129 (0%)
 Frame = -2

Query: 694 TFSQYTVVXEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNTAKVEPGSNCAIFXXXXXX 515
           ++++YTV  E ++  +  +    +   +G    T Y A  +    +PG    +       
Sbjct: 354 SYAEYTVCEEDNVFLLHSSLGFSEGANVGITYFTAYRALCHRLGAKPGETVLVHGASGGV 413

Query: 514 XXXXXXXXXXXANRIIGVDINPDKFEVAKKFGVNEFVNPKDYDKPIQQVLVDLTDG-GLE 338
                         +IG   +    E+ ++ G +   N ++ +    Q +++ TDG G +
Sbjct: 414 GTAAVQIARAYGMHVIGTAGSSKGEELVRQAGAHHVFNHRELN--YTQGILEATDGQGPD 471

Query: 337 YTFECIGNV 311
              E + NV
Sbjct: 472 VILEMLANV 480


>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1449

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = -2

Query: 358  LTDGGLEYTFECIGNVGTMRAALEACHK--GWGVSVIIGVAAAGEEISTRPFQ 206
            +TD   E  +E  G VG  +   + CHK   W   ++  V         RPFQ
Sbjct: 950  VTDMKTEQCYEVFGEVGVKQYRCKICHKTSAWHTGIVYHVRV--HHTHERPFQ 1000


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,859,247
Number of Sequences: 59808
Number of extensions: 434674
Number of successful extensions: 1309
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)