Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_M15
         (818 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical pr...    29   5.3  
U21308-9|AAW57822.1|  787|Caenorhabditis elegans Nfi (nuclear fa...    28   9.2  
U21308-7|AAW57823.1|  823|Caenorhabditis elegans Nfi (nuclear fa...    28   9.2  

>U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical
           protein C25G6.5 protein.
          Length = 455

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 602 YTVVTLIFKDFFPLF*FILQR*KIQHSCELRFLRR 498
           YT+  LI +  FPLF  +    +I H  +LRF  R
Sbjct: 211 YTLAVLITQYAFPLFSLVFAYSRIAHRMKLRFANR 245


>U21308-9|AAW57822.1|  787|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform b protein.
          Length = 787

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 675 RANQIK*FYFFLFPDYTLPYIESVLPTIKASKFYWY 782
           +AN IK F  +   D   P++E +LP ++AS + W+
Sbjct: 21  KANGIKCFSPYSQEDMG-PFVEQLLPFVRASAYNWF 55


>U21308-7|AAW57823.1|  823|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform c protein.
          Length = 823

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 675 RANQIK*FYFFLFPDYTLPYIESVLPTIKASKFYWY 782
           +AN IK F  +   D   P++E +LP ++AS + W+
Sbjct: 57  KANGIKCFSPYSQEDMG-PFVEQLLPFVRASAYNWF 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,635,984
Number of Sequences: 27780
Number of extensions: 280769
Number of successful extensions: 477
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)