Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_M15
         (818 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.36 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 152 RTFCLTSNTFRDLIDIGLNK 93
           +T  LT N  RD+ DIGLN+
Sbjct: 174 QTLNLTENRLRDINDIGLNR 193


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -3

Query: 297 PHLKNLNYHLIKTYDLPTSRVVLTVYFLGAILTV*RFFLIRHF--DRETIPYIL 142
           PH K L +HL K     T+  ++   F+   L      L+R F  + + IP  L
Sbjct: 355 PHQKKLRFHLAKERKASTTLGIIMSAFIVCWLPFFVLALVRPFLKNPDAIPAFL 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,629
Number of Sequences: 438
Number of extensions: 3473
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)