Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_M13
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0124 + 12526572-12526689,12528205-12528392                       43   2e-04
07_01_0998 - 8414492-8415175                                           24   6.1  

>09_03_0124 + 12526572-12526689,12528205-12528392
          Length = 101

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 21/47 (44%), Positives = 28/47 (59%)
 Frame = -1

Query: 248 RKFTENPFVPLGCLATAGALSMGLWSFRTGKTXXXXXXXXXXMLAQG 108
           +K  +NPFVP+G L TAG L+ GL SFR G +          ++AQG
Sbjct: 29  KKPVKNPFVPIGALVTAGVLTAGLISFRYGNSKLGQKLMRARVVAQG 75


>07_01_0998 - 8414492-8415175
          Length = 227

 Score = 24.2 bits (50), Expect(2) = 6.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 45 LCCCRCSCG 71
          +CCC C CG
Sbjct: 1  MCCCCCECG 9



 Score = 22.2 bits (45), Expect(2) = 6.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 48 CCCRCSCGASS 80
          CC RC CG  S
Sbjct: 17 CCDRCCCGCVS 27


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,696,025
Number of Sequences: 37544
Number of extensions: 222298
Number of successful extensions: 555
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)