Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_M13
(590 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_48284| Best HMM Match : HIG_1_N (HMM E-Value=5.6e-25) 36 0.033
SB_41052| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_32381| Best HMM Match : zf-CCHC (HMM E-Value=6.9e-07) 30 1.2
SB_21600| Best HMM Match : zf-CCHC (HMM E-Value=6.9e-07) 30 1.2
SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_53393| Best HMM Match : RVT_1 (HMM E-Value=5.8e-30) 30 1.6
SB_13669| Best HMM Match : zf-CCHC (HMM E-Value=1.3e-06) 30 1.6
SB_21743| Best HMM Match : rve (HMM E-Value=4e-17) 30 1.6
SB_13395| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_4864| Best HMM Match : zf-CCHC (HMM E-Value=6.9e-07) 30 1.6
SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_56534| Best HMM Match : RVT_1 (HMM E-Value=5.5e-28) 29 3.8
SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32) 29 3.8
SB_33010| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_16257| Best HMM Match : rve (HMM E-Value=1.1e-13) 27 8.7
>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3212
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/55 (49%), Positives = 32/55 (58%)
Frame = -1
Query: 272 ETTREKFHRKFTENPFVPLGCLATAGALSMGLWSFRTGKTXXXXXXXXXXMLAQG 108
ETT+EKF RK ENPFVP+GC T AL GL SF+ G ++AQG
Sbjct: 3092 ETTKEKFARKVKENPFVPIGCALTVSALVYGLLSFKRGDVGMQQTMMRARVVAQG 3146
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = -1
Query: 215 GCLATAGALSMGLWSFRTGKTXXXXXXXXXXMLAQG 108
GC ATAGAL GL SF+ G +LAQG
Sbjct: 3155 GCFATAGALVYGLLSFKRGNQKVQQQMMRARVLAQG 3190
>SB_48284| Best HMM Match : HIG_1_N (HMM E-Value=5.6e-25)
Length = 103
Score = 35.5 bits (78), Expect = 0.033
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 308 QLRKEMGASHHVETTREKFHRKFTENPFVPLGCLATAGALSMGLWSFR 165
QL + ET EK RK PF+P+G L T A+ G+ ++R
Sbjct: 9 QLSESWQTREERETETEKLIRKSKAQPFIPIGILGTTAAIVWGVIAYR 56
>SB_41052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 78 RKHHRNSGNSRGQQRTGGGKRAE 10
RK N+GN+ GQQ+T G KR +
Sbjct: 213 RKGRGNNGNNSGQQKTNGNKRRQ 235
>SB_32381| Best HMM Match : zf-CCHC (HMM E-Value=6.9e-07)
Length = 282
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 78 RKHHRNSGNSRGQQRTGGGKRAE 10
RK N+GN+ GQQ+T G KR +
Sbjct: 200 RKGRGNNGNNSGQQKTNGNKRRQ 222
>SB_21600| Best HMM Match : zf-CCHC (HMM E-Value=6.9e-07)
Length = 216
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 78 RKHHRNSGNSRGQQRTGGGKRAE 10
RK N+GN+ GQQ+T G KR +
Sbjct: 55 RKGRGNNGNNSGQQKTNGNKRRQ 77
>SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3038
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 78 RKHHRNSGNSRGQQRTGGGKRAE 10
RK N+GN+ GQQ+T G KR +
Sbjct: 2127 RKGRGNNGNNGGQQKTNGNKRRQ 2149
>SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 78 RKHHRNSGNSRGQQRTGGGKRAE 10
RK N+GN+ GQQ+T G KR +
Sbjct: 213 RKGRGNNGNNGGQQKTNGNKRRQ 235
>SB_53393| Best HMM Match : RVT_1 (HMM E-Value=5.8e-30)
Length = 1246
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 78 RKHHRNSGNSRGQQRTGGGKRAE 10
RK N+GN+ GQQ+T G KR +
Sbjct: 206 RKGRGNNGNNGGQQKTNGNKRRQ 228
>SB_13669| Best HMM Match : zf-CCHC (HMM E-Value=1.3e-06)
Length = 385
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 78 RKHHRNSGNSRGQQRTGGGKRAE 10
RK N+GN+ GQQ+T G KR +
Sbjct: 213 RKGRGNNGNNGGQQKTNGNKRRQ 235
>SB_21743| Best HMM Match : rve (HMM E-Value=4e-17)
Length = 865
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 78 RKHHRNSGNSRGQQRTGGGKRAE 10
RK N+GN+ GQQ+T G KR +
Sbjct: 213 RKGRGNNGNNGGQQKTNGNKRRQ 235
>SB_13395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 78 RKHHRNSGNSRGQQRTGGGKRAE 10
RK N+GN+ GQQ+T G KR +
Sbjct: 723 RKGRGNNGNNGGQQKTNGNKRRQ 745
>SB_4864| Best HMM Match : zf-CCHC (HMM E-Value=6.9e-07)
Length = 426
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 78 RKHHRNSGNSRGQQRTGGGKRAE 10
RK N+GN+ GQQ+T G KR +
Sbjct: 213 RKGRGNNGNNGGQQKTNGNKRRQ 235
>SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 393 CDSMCYNLVLY*NYIVMLKYDHSSVYYVFITLVNCEAFFC 512
CD + +++LY Y M V+++F+ +VNC+A FC
Sbjct: 61 CDLLVGHILLYRIYFGMF------VFFLFMAVVNCQASFC 94
>SB_56534| Best HMM Match : RVT_1 (HMM E-Value=5.5e-28)
Length = 1052
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 78 RKHHRNSGNSRGQQRTGGGKRAE 10
RK N GN+ GQQ+T G KR +
Sbjct: 198 RKGRGNIGNNGGQQKTNGNKRRQ 220
>SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32)
Length = 991
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 78 RKHHRNSGNSRGQQRTGGGKRAE 10
RK N GN+ GQQ+T G KR +
Sbjct: 54 RKGRGNIGNNGGQQKTNGNKRRQ 76
>SB_33010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -3
Query: 261 RKIS*KIYRESVCSSRLFSNSWSFIHGSLEF*NWKDKTXSANDESENACT 112
R+I ++ RES C + + SW+ I ++ N D + A + C+
Sbjct: 31 REIKREVRRESTCLTPIIFCSWTIIQNNVVIRNQSDPSSPATSTTTITCS 80
>SB_16257| Best HMM Match : rve (HMM E-Value=1.1e-13)
Length = 353
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -1
Query: 317 HWVQLRKEMGASHHVETTREKFHRKFTENPF 225
HWV++R+ H + E FHR + F
Sbjct: 265 HWVEVRRAEPGHHRSQAFAESFHRWLAQRLF 295
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,057,022
Number of Sequences: 59808
Number of extensions: 271788
Number of successful extensions: 628
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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