BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P01_pT_M12 (470 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 27 1.9 SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 26 3.3 SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 26 3.3 SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 4.4 SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 25 5.8 >SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 1294 Score = 26.6 bits (56), Expect = 1.9 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = -1 Query: 401 NHLRCFCSIIC*NSGLFTVKLNKTTTLGWSGVLKSAILGSKST 273 N+ RCF II + +F V N + S +L + + SKST Sbjct: 157 NYTRCFRQIILLLTNMFRVGFNLFDEMEVSSMLANCVWVSKST 199 >SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr 1|||Manual Length = 330 Score = 25.8 bits (54), Expect = 3.3 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Frame = +1 Query: 16 VVCLNRVLLTSMVNILGVGSRHGNIFI-FGIQKGLIVYEIIKSD 144 VV L ILGV + HGN + F + L V E++ D Sbjct: 30 VVALTLAACAGHCKILGVSTVHGNTTLEFTTKNALAVMELLNQD 73 >SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces pombe|chr 1|||Manual Length = 399 Score = 25.8 bits (54), Expect = 3.3 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +2 Query: 374 LSNKNTSNDLDSNCQRTKAIIHLDFY 451 +SNK S L QR A IH+D Y Sbjct: 214 ISNKRLSTKLPGRLQRALASIHVDNY 239 >SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1317 Score = 25.4 bits (53), Expect = 4.4 Identities = 13/50 (26%), Positives = 25/50 (50%) Frame = -1 Query: 419 VDSSSLNHLRCFCSIIC*NSGLFTVKLNKTTTLGWSGVLKSAILGSKSTP 270 +D+S +NHLRC ++ + L K + + G ++G++S P Sbjct: 66 LDTSCINHLRCGTTVA--TNALLERKGERCAFITTKGFKDGLLIGNQSRP 113 >SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces pombe|chr 1|||Manual Length = 446 Score = 25.0 bits (52), Expect = 5.8 Identities = 7/22 (31%), Positives = 15/22 (68%) Frame = +1 Query: 61 LGVGSRHGNIFIFGIQKGLIVY 126 L G+ GN++I+ ++ G ++Y Sbjct: 91 LAAGTEKGNLYIWSLKSGALIY 112 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,954,094 Number of Sequences: 5004 Number of extensions: 39361 Number of successful extensions: 74 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 74 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 180421690 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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