Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_M12
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92812-6|CAB07280.1|  372|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U97550-5|AAK18982.2|  497|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z81142-4|CAB03506.1|  338|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AF025451-5|AAB71202.2|  208|Caenorhabditis elegans Hypothetical ...    27   6.8  

>Z92812-6|CAB07280.1|  372|Caenorhabditis elegans Hypothetical
           protein T03E6.6 protein.
          Length = 372

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +1

Query: 16  VVCLNRVLLTSMVNILGVGSRHGNIFIFGIQKGLIVYEIIKSD 144
           +V  +R + TS +N+L +G    ++ I G   G+ +Y+I++ +
Sbjct: 71  LVISHRKMWTSSINVLMIGISFCDVLIIGNTFGMRIYDILQQN 113


>U97550-5|AAK18982.2|  497|Caenorhabditis elegans Hypothetical
           protein T20F7.7 protein.
          Length = 497

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -2

Query: 283 VSQLRLKGRVTDGRKET*KFILLGSARVLMSKCLRKKTVCVEVNHFSQ 140
           ++ + LK  +  GR  + + IL GS+ +   +C R  ++  +V HF Q
Sbjct: 258 IANIFLKMGILQGRCPSLRTILCGSSGLQKDRCKRLLSIFPQVTHFIQ 305


>Z81142-4|CAB03506.1|  338|Caenorhabditis elegans Hypothetical
           protein ZK1037.7 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 16  VVCLNRVLLTSMVNILGVGSRHGNIFIFGIQKGLIVYE 129
           +V   R + TS +NIL +G    +IFI G   G  +YE
Sbjct: 33  LVISRRRMWTSAINILMIGISFCDIFIIGKTLGDHIYE 70


>AF025451-5|AAB71202.2|  208|Caenorhabditis elegans Hypothetical
           protein C24H12.6 protein.
          Length = 208

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 353 ISRYFNKLSNKNTSNDLDSNCQRTKA 430
           I R  ++   KN +NDL+SN   TKA
Sbjct: 54  IRRLIDRYRRKNKNNDLESNVVATKA 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,556,374
Number of Sequences: 27780
Number of extensions: 209843
Number of successful extensions: 377
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)