Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_M12
         (470 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH...    27   4.8  
At5g59510.1 68418.m07458 expressed protein                             27   6.4  

>At5g15250.1 68418.m01786 FtsH protease, putative similar to
           FtsH-like protein Pftf precursor GI:4325041 from
           [Nicotiana tabacum]
          Length = 687

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +2

Query: 107 KKD**FMK*LNLTEMIHFDADSFFTQTFRHKYTRRTQKNKFLSFFTAISYSA 262
           KK   F K  +L++  H    S  TQ   HK+T+R      LS  TA+ +++
Sbjct: 22  KKSQQFQKPASLSKSSHTHKPSLKTQILHHKFTKR----NLLSLTTALGFTS 69


>At5g59510.1 68418.m07458 expressed protein
          Length = 144

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 137 NLTEMIHFDADSFFTQTFRHKYTRRTQKNKFLSFFTA--ISYSAFEP 271
           ++ E  HF +   FT++F  K +  + K  F   F+    SYS+ EP
Sbjct: 14  SIFETTHFSSKPVFTRSFSTKTSSSSSKPVFTRSFSTKPTSYSSSEP 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,715,693
Number of Sequences: 28952
Number of extensions: 187157
Number of successful extensions: 391
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)