Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_M10
(850 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit ... 67 3e-12
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 28 1.9
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 27 3.4
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos... 27 4.4
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi... 27 4.4
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa... 27 4.4
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos... 27 4.4
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos... 27 4.4
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 5.9
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 26 5.9
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz... 26 7.8
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 7.8
>SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit
Apc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 189
Score = 66.9 bits (156), Expect = 3e-12
Identities = 27/71 (38%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Frame = -1
Query: 850 SRISIRAGTHFNDXQEIEVIELIEPSGWEMIPIKDI-HDRPIRTYMIQIAVLSNHQNGRD 674
S + I AGT F D + + +++ EP+GW +P+ D + + ++IQI +L+NHQ+G+D
Sbjct: 93 STLRISAGTGFQDLEIVTTVQVEEPTGWVHVPVGDFGRNGLLDVHLIQIKILANHQSGKD 152
Query: 673 THMRQIKVHSP 641
+H+R IK+++P
Sbjct: 153 SHVRLIKIYAP 163
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 817 NDXQEIEVIELIEPSGWEMIPIKDIHD 737
+D +EI+ E+ E S WEMI +D D
Sbjct: 692 DDFEEIDTDEIEEQSDWEMISNQDASD 718
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 27.1 bits (57), Expect = 3.4
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -1
Query: 673 THMRQIKVHSPCEPTSFD--INKFRNFSTVQFQQYATIR*YNLLLPVER 533
T + + V P EP S + +N F FST + +A + Y+LLL E+
Sbjct: 424 TPRQLLNVKRPTEPASSNSSLNNFSGFSTKKDVLHAIEKVYDLLLDFEQ 472
>SPAC212.01c |||S. pombe specific DUF999 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 335 VSIY*CTLLLQLLSIIFIA 279
++IY C L+L LLS+IF A
Sbjct: 148 IAIYVCLLVLMLLSLIFFA 166
>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 280
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 335 VSIY*CTLLLQLLSIIFIA 279
++IY C L+L LLS+IF A
Sbjct: 148 IAIYVCLLVLMLLSLIFFA 166
>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
family 9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 335 VSIY*CTLLLQLLSIIFIA 279
++IY C L+L LLS+IF A
Sbjct: 148 IAIYVCLLVLMLLSLIFFA 166
>SPBC1348.01 |||S. pombe specific DUF999 protein family
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 335 VSIY*CTLLLQLLSIIFIA 279
++IY C L+L LLS+IF A
Sbjct: 148 IAIYVCLLVLMLLSLIFFA 166
>SPAC750.06c |||S. pombe specific DUF999 protein family
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 335 VSIY*CTLLLQLLSIIFIA 279
++IY C L+L LLS+IF A
Sbjct: 148 IAIYVCLLVLMLLSLIFFA 166
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 26.2 bits (55), Expect = 5.9
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +1
Query: 199 SFNIFIFILSKMMQNL*TKTHVTLKXXAIKIILSNCSS--KVHQ*METSLLAANWSSCRA 372
S+ + S M+ N+ + + +K I ++L +C K +E + A W
Sbjct: 1219 SYRLLGISCSDMVSNILSNECLPIKESFI-VLLGSCIKQLKTENFLEYKVTFAKWVEILL 1277
Query: 373 SYNFAYSPYNS 405
SY+ Y P++S
Sbjct: 1278 SYSNEYQPFSS 1288
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 481 NFMTKSFVSIFVIYLFSYEQLLFRNNCYKE 392
+F K+ + F I Y++ LF NCYK+
Sbjct: 14 DFTLKNLI-FFAISTLCYKRALFNENCYKK 42
>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 730 IRTYMIQIAVLSNHQNGRDTHMRQIKVHSPCEPTSFDINK 611
I T +I AVLS+H + + KV C+P S + K
Sbjct: 260 IETLLINEAVLSSHLPKIAETLTEAKVTLKCDPASLKVLK 299
>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 122
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +2
Query: 5 LYINYVFAWAVVVNSNFISQAFSLFKKKSHPKPCTWAFLSVSCLLVIIFLTF 160
L+ +V ++ NF S + +K HP TW S + +L + TF
Sbjct: 24 LWSTWVLQRTILKRPNFFSPN-PVVEKMVHPTLITWKLFSFTSVLTVSTFTF 74
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,109,638
Number of Sequences: 5004
Number of extensions: 60303
Number of successful extensions: 126
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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