Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_M10
         (850 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18290.1 68415.m02132 anaphase-promoting complex, subunit 10 ...    91   6e-19
At5g46040.1 68418.m05662 proton-dependent oligopeptide transport...    28   6.8  
At2g18350.1 68415.m02138 zinc finger homeobox family protein / Z...    28   9.0  
At1g57650.1 68414.m06542 disease resistance protein (NBS-LRR cla...    28   9.0  
At1g19260.1 68414.m02396 hAT dimerisation domain-containing prot...    28   9.0  

>At2g18290.1 68415.m02132 anaphase-promoting complex, subunit 10
           family / APC10 family contains Pfam PF03256:
           Anaphase-promoting complex, subunit 10 (APC10) domain;
           similar to anaphase promoting complex subunit APC10
           (GI:6463666) [Homo sapiens]
          Length = 192

 Score = 91.5 bits (217), Expect = 6e-19
 Identities = 44/98 (44%), Positives = 68/98 (69%), Gaps = 2/98 (2%)
 Frame = -1

Query: 850 SRISIRAGTHFNDXQEIEVIELIEPSGWEMIPIKDIHDRP--IRTYMIQIAVLSNHQNGR 677
           S+ISIRAG  F++ +EI+ +EL++P+GW  + +     R   + T+M+QIA+LSNH NGR
Sbjct: 97  SKISIRAGDGFHNLKEIKSVELVKPTGWVCLSLSGTDPRETFVNTFMLQIAILSNHLNGR 156

Query: 676 DTHMRQIKVHSPCEPTSFDINKFRNFSTVQFQQYATIR 563
           DTH+RQIKV+ P  P       F+ F++++F  Y+T+R
Sbjct: 157 DTHIRQIKVYGP-RPNPIPHQPFQ-FTSMEFLTYSTLR 192


>At5g46040.1 68418.m05662 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 586

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 154 NFXWKSGSKLASLTLSFNIFIFIL 225
           N  W  G  L++L L+F+IFIF+L
Sbjct: 214 NVGWAIGYGLSTLGLAFSIFIFLL 237


>At2g18350.1 68415.m02138 zinc finger homeobox family protein /
           ZF-HD homeobox family protein
          Length = 262

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 835 RAGTHFNDXQEIEVIELIEPSGWEMIPIKD 746
           R  T FN+ Q+ +++E  E  GW M  ++D
Sbjct: 200 RFRTKFNEEQKEKMMEFAEKIGWRMTKLED 229


>At1g57650.1 68414.m06542 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 709

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 740 MNVFDWNHFPTTRFY*FNHFNFLXIIEMCTS 832
           + + DW+ FP T     N+  FL  + MC S
Sbjct: 317 LRLLDWSCFPMTSLRFINNLEFLVELRMCYS 347


>At1g19260.1 68414.m02396 hAT dimerisation domain-containing protein
          Length = 769

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 706 AVLSNHQNGRDTHMRQIKVHSPCEP 632
           ++LS H N RD   R+  +  PC+P
Sbjct: 29  SILSYHPNQRDEVRREYLIRGPCQP 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,373,750
Number of Sequences: 28952
Number of extensions: 277057
Number of successful extensions: 511
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)