Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_M09
         (604 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    27   0.092
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    23   2.0  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   3.5  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 27.5 bits (58), Expect = 0.092
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +1

Query: 355 PRSYRGSTRRLRHFYSNVVKLYFKSD---IHLARL 450
           P+SY G+T  L+ FY  V K+  +S    IHL+ L
Sbjct: 57  PKSYFGTTTNLKRFYKVVEKILTQSSFECIHLSVL 91


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 355 PRSYRGSTRRLRHFY 399
           P+SY G+T  L+ FY
Sbjct: 57  PKSYFGTTTNLKRFY 71


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = -1

Query: 553 NWSMTTCQWNWTRCKLVGQHYNTF*VVCSLK 461
           +WS+    W W  C    Q +  F   C +K
Sbjct: 402 DWSVNAGMWMWLSCSSFFQQF--FHCYCPIK 430


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,297
Number of Sequences: 336
Number of extensions: 2389
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)