Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_M09
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0021 - 155700-156023                                             44   9e-05
11_01_0023 - 162079-162402                                             44   9e-05
01_05_0378 + 21628517-21628759                                         35   0.057
12_01_0474 + 3718846-3719097                                           31   0.53 
11_01_0596 + 4755453-4755490,4755675-4756047,4757739-4758940,475...    28   6.5  
03_02_0738 - 10824121-10825572                                         27   8.7  
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437...    27   8.7  

>12_01_0021 - 155700-156023
          Length = 107

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 28/94 (29%), Positives = 39/94 (41%)
 Frame = -2

Query: 384 SPSATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXAGSGGMWRFYTDD 205
           S S +SVG+ + +   A+ GPR  +                       G   M RFYTD+
Sbjct: 6   SQSQSSVGAAAGAARPATVGPRGTAAAAAGMRRRRASTAGGSGGFSGGGGSNMLRFYTDE 65

Query: 204 SXXXXXXXXXXXVMSLLFIASVFMLHIWGKXTRA 103
           +           VMSL FI  V  LH++GK  R+
Sbjct: 66  APGLRLSPTMVLVMSLCFIGFVTALHVFGKLYRS 99


>11_01_0023 - 162079-162402
          Length = 107

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 28/94 (29%), Positives = 39/94 (41%)
 Frame = -2

Query: 384 SPSATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXAGSGGMWRFYTDD 205
           S S +SVG+ + +   A+ GPR  +                       G   M RFYTD+
Sbjct: 6   SQSQSSVGASAGAARPATVGPRGTAAAAAGMRRRRASTAGGSGGFSGGGGSNMLRFYTDE 65

Query: 204 SXXXXXXXXXXXVMSLLFIASVFMLHIWGKXTRA 103
           +           VMSL FI  V  LH++GK  R+
Sbjct: 66  APGLRLSPTMVLVMSLCFIGFVTALHVFGKLYRS 99


>01_05_0378 + 21628517-21628759
          Length = 80

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -2

Query: 240 GSGGMWRFYTDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGKXTR 106
           G+  M +FYTD++           +MS+ FIA V +LH++GK  R
Sbjct: 33  GASTMLQFYTDEAAGRKMSPNSVLIMSIGFIAVVALLHVFGKLYR 77


>12_01_0474 + 3718846-3719097
          Length = 83

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 240 GSGGMWRFYTDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGKXTR 106
           G+  M +FYT+++           +MS+ F A V +LH++GK  R
Sbjct: 35  GTSTMLQFYTEEAAGCKMSPNAVLIMSIGFFAVVALLHVFGKLYR 79


>11_01_0596 +
           4755453-4755490,4755675-4756047,4757739-4758940,
           4759026-4759392
          Length = 659

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -1

Query: 190 SGASSCFSDVSPVYCIGIHVTHLGKRXXSIXIETXRWKXTCC 65
           S +SS F+   PV C+      LG +  S  I   RW    C
Sbjct: 171 SSSSSAFAPAPPVLCVTFGSPLLGNQALSRAILRERWAGNFC 212


>03_02_0738 - 10824121-10825572
          Length = 483

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 159 ETSLKQELAPL*LQENHRYRTSTFLQNQHQCFGFWLQL 272
           E   +  L  L + + HR+    FL+N +   GFW  +
Sbjct: 330 EADDQSALVFLLVTQRHRWGAKVFLENSYNLHGFWADI 367


>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
            4378900-4378970,4379038-4379144,4379241-4379711,
            4379791-4379976,4380132-4380425,4380820-4381434,
            4382219-4382615,4382768-4382850,4383397-4383567,
            4384046-4384243,4384754-4385314,4385401-4385460,
            4385553-4385869,4385980-4386403,4386539-4387006,
            4387093-4387209,4387306-4387427,4387506-4388247,
            4388453-4388485,4388625-4388879,4388975-4389160,
            4390115-4390453,4391293-4392045
          Length = 3017

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 181  SSCFSDVSPVYCIGIHVTHLGKRXXSI 101
            +SCFSDV+P+ C+ + +     R  S+
Sbjct: 1850 ASCFSDVTPLSCLSVWLDITASREMSL 1876


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,071,923
Number of Sequences: 37544
Number of extensions: 243371
Number of successful extensions: 496
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)