Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_M09
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.0  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 247 WCWFWRNVEVLY 212
           WC  WR+++VL+
Sbjct: 118 WCDVWRSLDVLF 129


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/21 (28%), Positives = 9/21 (42%)
 Frame = -1

Query: 553 NWSMTTCQWNWTRCKLVGQHY 491
           +WS+    W W  C    Q +
Sbjct: 406 DWSVNAGMWMWLSCSSFFQQF 426


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = -1

Query: 256 PKHWCWFWRNVEVLY 212
           P H+ W +++  +LY
Sbjct: 139 PNHYLWLYKDKTILY 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,789
Number of Sequences: 438
Number of extensions: 2901
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)