Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_M07
         (639 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    27   0.13 
AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    22   3.8  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   6.6  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   8.7  

>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = -2

Query: 383 SKLAPVRSSSETQPGKKTITLRKTKNSSIESTMSL 279
           S L P RSS ++ PGK+T  + + K ++++ T+++
Sbjct: 236 SSLRP-RSSQKSAPGKRTPLISRAKINTVKQTIAV 269


>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 410 ESSNNPLYRSKLAPVRSSSETQPGKKTITLRKTKNSS 300
           E +NN    + L    S+++   G KTI  RK + S+
Sbjct: 28  EDANNLTQSTILTTCESNTDFSFGSKTIDFRKIQCSN 64


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +2

Query: 485 APPSGSCRPWATPAVQLLLRSFCL 556
           +PP   C PW  P     L++  L
Sbjct: 28  SPPPSYCDPWYNPYYYQYLQNAAL 51


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 519 RLLFSFYCDHFVCV 560
           +L F FY  +F+CV
Sbjct: 151 QLYFQFYYTYFLCV 164


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,591
Number of Sequences: 336
Number of extensions: 2541
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)