Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_M07
(639 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 33 0.16
At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3 d... 30 1.1
At2g31480.1 68415.m03845 expressed protein contains Pfam profile... 30 1.5
At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger) fa... 29 2.6
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 29 3.4
At3g57440.1 68416.m06395 hypothetical protein 29 3.4
At1g05490.1 68414.m00559 C protein immunoglobulin-A-binding beta... 29 3.4
At5g63490.1 68418.m07970 CBS domain-containing protein / octicos... 28 4.5
At4g16150.1 68417.m02450 calmodulin-binding protein similar to a... 28 6.0
At3g15320.1 68416.m01934 hypothetical protein contains similarit... 28 6.0
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 28 6.0
At2g21235.1 68415.m02522 bZIP protein-related similar to VirE2-i... 27 7.9
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 27 7.9
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 27 7.9
At1g53830.1 68414.m06127 pectinesterase family protein identical... 27 7.9
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = -2
Query: 500 IQKAEPTTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKLAPVR 363
++ SQ T + A+ ++++D ++PESS+NP Y L P R
Sbjct: 260 VRNTSSYASQHTPSLLGAVPRRNLDDYIYPESSSNPGYGVSLPPGR 305
>At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3
domain-containing protein similar to SP|Q9P6R9 Cell
cycle control protein cwf22 {Schizosaccharomyces pombe};
contains Pfam profiles PF02854: MIF4G domain, PF02847:
MA3 domain
Length = 900
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 429 GRYRSPRELEQSSLQIEARAGQVVVRNPTGQEDD 328
GR RSP+ +E+ + R +V+ P+ +EDD
Sbjct: 159 GRRRSPKVMEKQGRERSHRGSRVIADKPSDEEDD 192
>At2g31480.1 68415.m03845 expressed protein contains Pfam profile
PF03754: Domain of unknown function (DUF313)
Length = 472
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -2
Query: 332 TITLRKTKNSSIESTMSLPNQKSLEKKHGGLRHQKAVGAQSDITLTTQTSIT 177
T ++RK KN++ + + LP KS + +R + A D+ T T T
Sbjct: 21 TFSIRKKKNTTSDPKLLLPRSKSTGANYESMRLPQGKKALPDVVTTKDTKRT 72
>At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 29.1 bits (62), Expect = 2.6
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = -2
Query: 356 SETQPGKKTITLRKTKNSSIESTMSLPNQKSLEKKHGGLRHQKAVGAQSDITLTTQTSIT 177
+ETQ G+ T L+K ++E S LEK ++ + A ++D LT +
Sbjct: 21 TETQEGEMTKNLKKRDLDAVEDEDSNNESSRLEKLEKKIKKETARKLETDFVLTGEED-- 78
Query: 176 DDRKALREALYQGIF 132
DD L ++ Q F
Sbjct: 79 DDALPLACSICQNPF 93
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 341 GKKTITLRKTKNSSIESTMSLPNQKSLEKKHGGL-RHQK 228
G KTI +TK + E +++L N + E HG + +HQ+
Sbjct: 351 GGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQR 389
>At3g57440.1 68416.m06395 hypothetical protein
Length = 240
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 305 SSIESTMSLPNQKSLEKKHGGLRHQKAVGAQSDI 204
SS+ES + + NQKS EK GG + K S I
Sbjct: 147 SSVESRIKVRNQKSNEKLRGGGKTMKESSRSSSI 180
>At1g05490.1 68414.m00559 C protein immunoglobulin-A-binding beta
antigen-related contains weak similarity to C protein
immunoglobulin-A-binding beta antigen [Streptococcus
agalactiae] gi|18028989|gb|AAL56250
Length = 731
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = -1
Query: 480 NVTKNADSIERHQPKVSGRYRSPRELEQSSLQIEARAGQVVVRNPTGQEDDYFEENKKFV 301
NV+K DS+ + K +G P E+E E + P+ + F K
Sbjct: 428 NVSKYEDSVSINSGKTTGAPSRP-EVENPETGKELNTPE----KPSISRPEIFTTEKAID 482
Query: 300 NRINDEPSKPEVF 262
++ +EPS+PE++
Sbjct: 483 VQVPEEPSRPEIY 495
>At5g63490.1 68418.m07970 CBS domain-containing protein /
octicosapeptide/Phox/Bemp1 (PB1) domain-containing
protein contains Pfam profiles: PF00571 CBS domain,
PF00564: PB1 domain
Length = 543
Score = 28.3 bits (60), Expect = 4.5
Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 1/106 (0%)
Frame = -2
Query: 518 LPKDDMIQKAEPTTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKLAPVRSSSETQPG 339
+P D + K PT + T+ + Q S V++ E ++ SK +R +E P
Sbjct: 226 IPDDTKVLKVSPTDTVLTVAKKMVEFQSSCAVVI-IEDKLRGIFTSKDILMRVVAENLPP 284
Query: 338 KKTITLRKTKNSSIESTMSLPNQKSLEKKH-GGLRHQKAVGAQSDI 204
+T+ + + + P ++L H G H + D+
Sbjct: 285 SETLVETVMTQNPESTIVDTPIVEALHIMHEGKFLHLPVTDKEGDV 330
>At4g16150.1 68417.m02450 calmodulin-binding protein similar to
anther ethylene-upregulated calmodulin-binding protein
ER1 GI:11612392 from [Nicotiana tabacum]
Length = 906
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = -2
Query: 572 ISLLNTNKMIAIEAEQQALPKDDMIQKAEPTTSQRTLTRSSAISQKSVDVIVHPESSNNP 393
IS L + + +++ ++A+P+DD + K E Q L S + V+ S N
Sbjct: 448 ISQLFSFEHRSVQFIEKAIPQDDQLYKWEEFEFQVRLAHLLFTSSNKISVLTSKISPENL 507
Query: 392 LYRSKLA 372
L KLA
Sbjct: 508 LEAKKLA 514
>At3g15320.1 68416.m01934 hypothetical protein contains similarity
to hypothetical proteins of [Arabidopsis thaliana]
Length = 287
Score = 27.9 bits (59), Expect = 6.0
Identities = 31/142 (21%), Positives = 53/142 (37%), Gaps = 6/142 (4%)
Frame = -2
Query: 635 HR*RGPPXDDVTSSLAHLRIIISLLNTNKMIAIEAEQQALPKDDMIQKAEPTTSQRTLTR 456
H+ G DDV L I +T K ++ + L D +A + R
Sbjct: 122 HKTSGQSEDDVMK----LAYEIYFNDTKKNFTLDHAWRELRYDQKWCEATSRKGDKNAKR 177
Query: 455 SSAISQKSVDVIVHPES----SNNPLYRSKLAPVRSSSETQPGKKTITLRKTKNSSIEST 288
+ +H E S P ++ A R S+ + GKK T++ S+E
Sbjct: 178 KKCGDGNASSQPIHVEDDSVMSRPPGVKAAKAKARKSATIKEGKKPATVKDDSGQSVEHF 237
Query: 287 MSL--PNQKSLEKKHGGLRHQK 228
+L +K ++K +HQ+
Sbjct: 238 QNLWELKEKDWDRKEKQSKHQQ 259
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 27.9 bits (59), Expect = 6.0
Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 2/161 (1%)
Frame = -2
Query: 611 DDVTSSLAHLRIIISLLNTN-KMIAIEAEQQALPKDDMIQKAEPTTSQRTLTRSSAISQK 435
+DV S A +I++ L N K+ A++A + + T + +T ++
Sbjct: 283 EDVESD-ALATLILNKLRANIKVCAVKAPGFGENRKANLHDLAALTGAQVITEELGMNLD 341
Query: 434 SVDVIVHPESSNNPLYRSKLAPVRSSSETQP-GKKTITLRKTKNSSIESTMSLPNQKSLE 258
++D+ + + + + + + Q G++ +R +S Q+ L
Sbjct: 342 NIDLSMFGNCKKVTVSKDDTVVLDGAGDKQAIGERCEQIRSMVEASTSDYDKEKLQERLA 401
Query: 257 KKHGGLRHQKAVGAQSDITLTTQTSITDDRKALREALYQGI 135
K GG+ K GA + +TD A + A+ +GI
Sbjct: 402 KLSGGVAVLKIGGASETEVSEKKDRVTDALNATKAAVEEGI 442
>At2g21235.1 68415.m02522 bZIP protein-related similar to
VirE2-interacting protein VIP1 [Arabidopsis thaliana]
GI:7258340, tbZIP transcription factor [Arabidopsis
thaliana] GI:17065884
Length = 550
Score = 27.5 bits (58), Expect = 7.9
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Frame = -2
Query: 485 PTTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKLAPV-RSSSETQPGKKTITLRKTK 309
P S + RSS S + S+ PL+ PV RS+S G + K
Sbjct: 230 PVYSSNPMVRSSPPGHPSPSAHLEEMSNRPPLHPQPRVPVTRSNSAKVSGSRPRKYHKRT 289
Query: 308 NSSIESTMSLPNQKSLEKKHGGL 240
NS + S + + + E G L
Sbjct: 290 NSELSSMLVGDSSRGEEGGFGKL 312
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 884
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 530 EQQALPKDDMIQKAEPTTSQRTLTRSSAISQKSVDVIVHPESSN 399
E +A+PKDD +Q +S L+ + + + S ++V E +N
Sbjct: 504 EDEAIPKDDSVQHNHKLSSS-LLSTADPLHKASAKILVSVEGAN 546
>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to ATPase [Homo sapiens] GI:531196; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain, PF00097:
Zinc finger, C3HC4 type (RING finger)
Length = 1287
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -2
Query: 398 NPLYRSKLAPVRSSSETQPGKKTITLRKTKNSSIES--TMSLPNQKSLE 258
NP+ R+ PV+ + Q KT+ LR+TK S ++ +SLP KS+E
Sbjct: 863 NPITRN---PVKGYQKLQAILKTVMLRRTKGSLLDGKPIISLP-PKSIE 907
>At1g53830.1 68414.m06127 pectinesterase family protein identical to
pectinesterase 2 (PME2/ PE 2) SP:Q42534 from
[Arabidopsis thaliana];contains Pfam profiles: PF01095
pectinesterase, PF04043 plant invertase/pectin
methylesterase inhibitor
Length = 587
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/82 (23%), Positives = 33/82 (40%)
Frame = -2
Query: 302 SIESTMSLPNQKSLEKKHGGLRHQKAVGAQSDITLTTQTSITDDRKALREALYQGIFHRH 123
++E P QKSL K L+ + + T S D + +R+AL +G H
Sbjct: 147 AVEDLHQYPKQKSLRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVE 206
Query: 122 RRTIFAVGSFLRMLRSKTSNYD 57
A+ M + +N++
Sbjct: 207 HMCSNALAMIKNMTETDIANFE 228
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,739,610
Number of Sequences: 28952
Number of extensions: 238674
Number of successful extensions: 809
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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