Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_M04
(518 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 40 2e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 40 3e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 39 4e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 38 0.001
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 36 0.003
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 35 0.008
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 35 0.008
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 34 0.015
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 33 0.026
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 32 0.059
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 31 0.078
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 30 0.18
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 30 0.18
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 30 0.24
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 30 0.24
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 28 0.96
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 28 0.96
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 27 1.7
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 26 3.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 5.1
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 6.8
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 25 9.0
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 25 9.0
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 40.3 bits (90), Expect = 2e-04
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Frame = -1
Query: 518 RLXEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTE 354
RL K+ D+EREF +YG + + V N G+AF+ FE ++ + A A G
Sbjct: 106 RLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLM 165
Query: 353 MLGATLKVEISR 318
+ G + V++ R
Sbjct: 166 LNGRRIVVDVER 177
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 39.5 bits (88), Expect = 3e-04
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Frame = -1
Query: 500 KKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMNGTEMLGATLK 333
K + LE F K+GK+ + + G FAF+ ++ + AE+A +++NGTE+ G +
Sbjct: 120 KPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIA 179
Query: 332 VE 327
V+
Sbjct: 180 VD 181
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 39.1 bits (87), Expect = 4e-04
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = -1
Query: 461 KLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 327
K N + +P FAFI FEN A++A +++NG+ G TLKVE
Sbjct: 55 KKNKSTDSKSPTLFAFITFENKCSADNAIASLNGSSFQGNTLKVE 99
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.5 bits (83), Expect = 0.001
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -1
Query: 497 KEDLEREFD-KYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 324
++D++ E D KYGK+ + V N G F++FEN AE A + ++ G T+K I
Sbjct: 530 EQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGRTIKASI 588
Score = 31.5 bits (68), Expect = 0.078
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = -1
Query: 494 EDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
ED++ F+ +G + V + + GF +I++ N A +A MNG ++ G ++V
Sbjct: 354 EDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 36.3 bits (80), Expect = 0.003
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = -1
Query: 497 KEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
K+D++ YG+L SV V + GFAF EF +EA +A A+ T +LG L +
Sbjct: 734 KKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALKNTHLLGRHLVL 793
Query: 329 E 327
+
Sbjct: 794 Q 794
Score = 31.1 bits (67), Expect = 0.10
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = -1
Query: 497 KEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 333
++DL+ F +G+L V + + NP GFA+I+F + +A A ++ G L
Sbjct: 336 EDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLH 395
Query: 332 V 330
V
Sbjct: 396 V 396
Score = 31.1 bits (67), Expect = 0.10
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -1
Query: 425 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 315
GF F+EF++ A A AMNG + G L++++S +
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQ 702
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 34.7 bits (76), Expect = 0.008
Identities = 20/67 (29%), Positives = 36/67 (53%)
Frame = -1
Query: 518 RLXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGAT 339
R+ +ED+ F YG++ + +N GF F+E E+ ++A D + G E +G+
Sbjct: 10 RIPPQATREDMMDFFKGYGQILDCKL-MN--GFGFVEVEDARDARDIVNDFQGKEFMGSR 66
Query: 338 LKVEISR 318
+ VE +R
Sbjct: 67 IVVEPAR 73
Score = 26.2 bits (55), Expect = 2.9
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 345
L E + +DL+ K G+ PG +EF ++ +A +++NG + G
Sbjct: 105 LSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGEVIKG 161
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 34.7 bits (76), Expect = 0.008
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -1
Query: 497 KEDLEREFDKYGKLNSVWV--ALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 324
K LE F YGK+ V L G AF+ F+NL+ A A + G + G + ++
Sbjct: 43 KRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQY 102
Query: 323 SR 318
S+
Sbjct: 103 SK 104
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 33.9 bits (74), Expect = 0.015
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Frame = -1
Query: 509 EGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAMNG--TEML 348
+G++ +L EF+ +G L + + FAF+E+E+ ++AEDA ++G E
Sbjct: 16 DGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVHGRRLERG 75
Query: 347 GATLKVEISRK 315
G L+VE +++
Sbjct: 76 GGVLRVEWAKQ 86
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 33.1 bits (72), Expect = 0.026
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVA--LNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
I E++ F +YG + + + + G AF+ +EN+Q+A AC ++G + L V
Sbjct: 23 ITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSGYNFMDRYLVV 82
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 31.9 bits (69), Expect = 0.059
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 360
+ +E L F YGKL SV +N P A + F +L+ A A + M+G
Sbjct: 174 LSQERLYSIFRTYGKLRSV--TINSPTSATLSFSSLRSATSALNCMHG 219
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 31.5 bits (68), Expect = 0.078
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -1
Query: 497 KEDLEREFDKYGKL-NSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 324
K+D+ E +K G++ N V P G + F N +EAE M G G ++ I
Sbjct: 273 KDDITEEAEKCGRVTNVVLYDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASI 331
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 30.3 bits (65), Expect = 0.18
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = -1
Query: 494 EDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
EDLE F ++GK+ S V + +AFIEF+N + E A M + + + V
Sbjct: 258 EDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHV 317
Query: 329 EISR 318
+ S+
Sbjct: 318 DFSQ 321
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 30.3 bits (65), Expect = 0.18
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 425 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
GF F EF + Q+ E AC +N ++ G ++V
Sbjct: 53 GFGFCEFLHEQDVEYACQILNQVKLFGKPIRV 84
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 29.9 bits (64), Expect = 0.24
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 425 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 321
GF F EF+N +AE A S ++G + G L + +
Sbjct: 352 GFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFA 386
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 29.9 bits (64), Expect = 0.24
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Frame = -1
Query: 518 RLXEGIKKEDLEREFDKYGKLNSVWVA---------LNPPGFAFIEFENLQEAEDACSAM 366
RL KK ++ F+ G + V + L P G AF+ F N ++ + A +
Sbjct: 50 RLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIETL 109
Query: 365 NGTEMLGATLKVEISR 318
NG + + V+ +R
Sbjct: 110 NGKTLDDREIVVQKAR 125
Score = 27.9 bits (59), Expect = 0.96
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 425 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 327
GF F+ F N ++ A MNG ++ TL V+
Sbjct: 259 GFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVK 291
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 27.9 bits (59), Expect = 0.96
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGAT 339
+ E+L+ F G +N V + + P GFA+IEF +A +NG+ +
Sbjct: 66 VTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL-LLNGSMLHERP 124
Query: 338 LKVEISR 318
LKV R
Sbjct: 125 LKVTPKR 131
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 27.9 bits (59), Expect = 0.96
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -1
Query: 425 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 315
G+A++ F N+++ E A +N T + G ++ S++
Sbjct: 122 GYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQR 158
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 27.1 bits (57), Expect = 1.7
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = -1
Query: 518 RLXEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTE 354
RL G ++ + F ++G + + ++ N +AFIEFE+L A M+
Sbjct: 111 RLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETMHNYL 170
Query: 353 MLGATLKVEI 324
+ G L+ ++
Sbjct: 171 LYGKLLQCKV 180
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -1
Query: 497 KEDLEREFDKYGKLNSVWVAL 435
KE++E EF+ YGK + V VAL
Sbjct: 435 KEEVEIEFELYGKNDDVNVAL 455
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 442 TQTEFSFPYLSNSRSRS 492
T+ +FPYL NSR+RS
Sbjct: 329 TEYRIAFPYLYNSRARS 345
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 377 THLPPPASSQIL*KRNLGDLVLPKLSLVF 463
THL S L ++ L +LV+P ++L+F
Sbjct: 1156 THLQSEESESQLREKILANLVMPNITLIF 1184
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -1
Query: 476 FDKYGKLNSVWVA--LNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 327
F KYGK+ + P FAF+ F++ Q A A + L+VE
Sbjct: 386 FSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYAAVCGKTRSPHQKKPLRVE 437
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 425 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
GF ++FEN +A + +NG G L++
Sbjct: 321 GFGVVQFENENDAASSIEKLNGYRYGGRPLQL 352
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,424,003
Number of Sequences: 5004
Number of extensions: 22381
Number of successful extensions: 94
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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