Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_M04
(518 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 72 3e-13
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 4e-12
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 50 1e-06
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 8e-06
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 47 1e-05
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 44 6e-05
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 42 2e-04
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.004
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.005
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 37 0.011
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.015
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.015
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.026
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 33 0.14
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 33 0.19
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 32 0.25
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 32 0.25
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.25
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 32 0.33
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.43
SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 30 1.3
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 29 1.7
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 29 1.7
SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 29 2.3
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 29 3.0
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 28 4.0
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 28 4.0
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 28 4.0
SB_16080| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 27 7.0
SB_5211| Best HMM Match : 7tm_1 (HMM E-Value=0.015) 27 9.3
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 71.7 bits (168), Expect = 3e-13
Identities = 29/65 (44%), Positives = 45/65 (69%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATL 336
L +LER F+K+G+L+ VWVA NPPGFAF+E+E+ ++AE+A ++G + T+
Sbjct: 11 LGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDAEEAVRELDGANVCDRTI 70
Query: 335 KVEIS 321
+VE S
Sbjct: 71 RVEFS 75
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 68.1 bits (159), Expect = 4e-12
Identities = 28/66 (42%), Positives = 44/66 (66%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATL 336
+ + K ++EREF+ +G L VWVA NPPGFAF FE+ ++AEDA ++G + G
Sbjct: 9 IGDNASKREIEREFETFGPLRDVWVARNPPGFAFCVFEDRRDAEDAVRELDGRYICGQRA 68
Query: 335 KVEISR 318
+VE+++
Sbjct: 69 RVELAK 74
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/66 (42%), Positives = 43/66 (65%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATL 336
L + K ++E EF YG L VWVA NPPGFAF F++ ++AEDA ++G + G +
Sbjct: 39 LGDNASKREIENEFGYYGPLKDVWVARNPPGFAFCIFDDRRDAEDAVRELDGRYICGQRV 98
Query: 335 KVEISR 318
+VE+++
Sbjct: 99 RVELAK 104
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 50.0 bits (114), Expect = 1e-06
Identities = 27/67 (40%), Positives = 40/67 (59%)
Frame = -1
Query: 518 RLXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGAT 339
RL G ++D+ R F YG+L + + N + F+EFE+ ++A+DA NG EMLG
Sbjct: 9 RLPYGTTEDDVRRFFRSYGRLRDINLKNN---YGFVEFEDDRDADDAVYECNGKEMLGER 65
Query: 338 LKVEISR 318
+ VE SR
Sbjct: 66 ILVEHSR 72
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 47.2 bits (107), Expect = 8e-06
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNGTEM 351
+ E +++D+ F YG++ ++ V L+ G+A +E+E +EA+ A A+NG EM
Sbjct: 300 IHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNGAEM 359
Query: 350 LGATLKVE 327
LG + V+
Sbjct: 360 LGQNISVD 367
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/67 (31%), Positives = 41/67 (61%)
Frame = -1
Query: 518 RLXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGAT 339
RL +++ D+E+ YGK+ + + G+ F+EF++ ++AEDA +NG +++G
Sbjct: 695 RLPRDVRESDVEKFLRGYGKIRDISLKR---GYGFVEFDDHRDAEDAVHDLNGRDLIGER 751
Query: 338 LKVEISR 318
+ VE S+
Sbjct: 752 VVVEFSK 758
Score = 30.7 bits (66), Expect = 0.75
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -1
Query: 494 EDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
+DL+ F KYGK+ G +EFE+ + A ++ TE+ G ++V
Sbjct: 812 QDLKDYFRKYGKVTYADAHKKRIGEGVVEFESKDDLNTAIEKLDDTELGGRRIRV 866
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 44.4 bits (100), Expect = 6e-05
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAMNGTEML 348
L + ++++DL F KYG + V + PP FAF+EFE+ ++AEDA +G E
Sbjct: 268 LPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPP-FAFVEFEDPRDAEDAVKGRDGHEFD 326
Query: 347 GATLKVEISR 318
G ++VE R
Sbjct: 327 GYRIRVEFPR 336
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 42.3 bits (95), Expect = 2e-04
Identities = 21/58 (36%), Positives = 34/58 (58%)
Frame = -1
Query: 518 RLXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 345
RL G +++D+++ F YG+ + L G+ F+EF+ +AEDA NG +MLG
Sbjct: 9 RLPYGTREDDVKKFFYTYGRFKIREIILKD-GYGFVEFDYSDDAEDAVYECNGKKMLG 65
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGAT 339
+ DL + F++YGK+ V + + G AFI F + Q A++A +A+N +M G T
Sbjct: 21 LTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVAAVNKKQMFGRT 80
Query: 338 LKVEISR 318
+K I++
Sbjct: 81 IKCTIAK 87
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/58 (31%), Positives = 34/58 (58%)
Frame = -1
Query: 518 RLXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 345
RL ++ DLE+ YG++ + + L G+ F+EF++ ++A+D +NG +LG
Sbjct: 11 RLPRDCRERDLEKFVRGYGRVREISMKL---GYGFVEFDDYRDADDCVYDLNGRNLLG 65
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = -1
Query: 500 KKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 333
K+ ++E F K+G + V + N P G+ ++E+E A A ++ TE+ G T+
Sbjct: 183 KESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLDKTEVKGRTIS 242
Query: 332 VEIS 321
V +S
Sbjct: 243 VALS 246
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAMNGTEML 348
L + I E L EF YG ++S V N GF F+ F + +EA A + MNG ++
Sbjct: 219 LDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMNGRILI 278
Query: 347 GATLKVEISRK 315
L V ++++
Sbjct: 279 SKPLYVALAQR 289
Score = 35.5 bits (78), Expect = 0.026
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = -1
Query: 464 GKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMNGTEMLGATL 336
GK+ S+ V +P G F F+ FE +EAE+A + +NG E+ G L
Sbjct: 133 GKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRL 179
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Frame = -1
Query: 494 EDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGT 357
EDL++ F KYG L +++ + GFAF+ F ++AEDA M+ T
Sbjct: 30 EDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDAMDCMDAT 80
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Frame = -1
Query: 497 KEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNGTEMLGATLK 333
++D++ F+ +GK+ ++ P G+ FIE+EN Q A DA ++MN ++ G L+
Sbjct: 212 EDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASMNLFDLGGQFLR 271
Query: 332 V 330
V
Sbjct: 272 V 272
Score = 36.3 bits (80), Expect = 0.015
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSV---WVALNPP--GFAFIEFENLQEAEDACSAMNGTEMLGAT 339
+++E + F +G +N + W LN GFAF+E++ + A+ A MNG + G
Sbjct: 113 LREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQMNGVLLGGRN 172
Query: 338 LKV 330
+KV
Sbjct: 173 IKV 175
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 37.5 bits (83), Expect = 0.007
Identities = 23/67 (34%), Positives = 35/67 (52%)
Frame = -1
Query: 518 RLXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGAT 339
RL + K DLE F YGKL + + FIE+E+ ++AE+A N ++ G+
Sbjct: 12 RLSKETKLRDLENVFYLYGKLLRCDL---KTAYGFIEYEDPRDAEEAMRRENNRKLFGSR 68
Query: 338 LKVEISR 318
+ VE R
Sbjct: 69 IVVEYVR 75
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 37.5 bits (83), Expect = 0.007
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Frame = -1
Query: 518 RLXEGIKKEDLERE-FDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGT 357
RL K L +E F + G + VA+NP GFAF+++ +EAE A NG
Sbjct: 211 RLPRDFKNGGLIKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQRAHNGR 270
Query: 356 EMLGATLKV 330
++ G+ ++V
Sbjct: 271 QVEGSNIRV 279
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 36.7 bits (81), Expect = 0.011
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEM 351
L E + ++ L F +G + V + ++ GF F+EFE ++ A MN +E+
Sbjct: 12 LAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMNESEL 71
Query: 350 LGATLKVEISR 318
G T++V +++
Sbjct: 72 FGRTIRVNLAK 82
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 36.3 bits (80), Expect = 0.015
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -1
Query: 425 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
GF F+ F N ++A+ A ++NG E+ G TLK+
Sbjct: 100 GFGFVTFANPEDAQTAVKSLNGKEVQGRTLKI 131
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 36.3 bits (80), Expect = 0.015
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVA----LNPPGFAFIEFENLQEAEDACSAMNGTEMLGATL 336
+ + DL+ F +Y ++ ++ P GFAF+ F + + EDA + ++G E G ++
Sbjct: 241 VNEADLQDRFSRYDVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINELDGQEFDGRSM 300
Query: 335 KVEISR 318
KV +R
Sbjct: 301 KVNQAR 306
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 35.5 bits (78), Expect = 0.026
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGAT 339
+ +ED+++ F G + S + + G+AF+ ++N +A A MNG + T
Sbjct: 38 MSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKT 97
Query: 338 LKVEISR 318
LKV +R
Sbjct: 98 LKVSFAR 104
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/68 (27%), Positives = 38/68 (55%)
Frame = -1
Query: 518 RLXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGAT 339
RL ++DLE +GK+ V G+A++ F+ ++A+ A +A+N +E GA
Sbjct: 9 RLPATATEKDLENLVKVFGKVREVDFK---EGYAYVVFKENKDADRAVAALNNSEFHGAK 65
Query: 338 LKVEISRK 315
+ +E +++
Sbjct: 66 ILMEKAKE 73
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 32.7 bits (71), Expect = 0.19
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = -1
Query: 491 DLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGATLKVE 327
DL + F +G + S V ++ F F+ ++N+ A++A MNG ++ LKV+
Sbjct: 292 DLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQ 351
Query: 326 ISR 318
+ R
Sbjct: 352 LKR 354
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 324
I ++DLE F ++GK+ + N F F++FE + A++A + +G + G + V I
Sbjct: 58 IARQDLEEIFSRHGKVLGCSLHAN---FGFVQFETEKGADEAVAKEHGRIINGKKIDVRI 114
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 32.3 bits (70), Expect = 0.25
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEM 351
L + K+ ++ F YG++ +V + + GFA++E+ + +E E A M+G ++
Sbjct: 1164 LTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKHMDGGQI 1223
Query: 350 LGATLKVE 327
G + V+
Sbjct: 1224 DGQEIAVQ 1231
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = -1
Query: 476 FDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
F+ +G ++SV + + G+ F++F + A+ A MNG E+ G LK+
Sbjct: 262 FEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPLKI 315
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 31.9 bits (69), Expect = 0.33
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -1
Query: 422 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 318
F F+ ++N+ A++A MNG ++ LKV++ R
Sbjct: 305 FGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKR 339
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 31.9 bits (69), Expect = 0.33
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = -1
Query: 494 EDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNG 360
ED+ F++YG + VWV + G +++F A AC M+G
Sbjct: 37 EDIRSAFEQYGTIEDVWVVKDKATKENRGVCYVKFVKASSAALACEEMDG 86
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 31.5 bits (68), Expect = 0.43
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = -1
Query: 491 DLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 315
+LEREFD++G + + A+I +++L A A M G +M L+++ + K
Sbjct: 333 ELEREFDRFGAIRRIDYR-KGGDHAYILYDSLDAASVAAREMRGFQMGDRRLRIDFADK 390
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMNG 360
L GI +DL F+K+G + V + G +AF++F +L A A AM G
Sbjct: 244 LETGISCQDLRLSFEKFGVVLDVDIKRPARGQGNTYAFVKFADLDVAAKAKCAMQG 299
>SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 31.1 bits (67), Expect = 0.57
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = -1
Query: 494 EDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDACSAMNGTEMLGATLKVE 327
E++E DK + +W+ +P G + + +E+ A A NG + +G ++KVE
Sbjct: 192 EEVEEMIDKKLQKPKIWIYKHPDGSSKGECTVTYEDPPTASAAIEWFNGKDFMGQSIKVE 251
Query: 326 IS 321
++
Sbjct: 252 LA 253
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 30.7 bits (66), Expect = 0.75
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = -1
Query: 476 FDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 318
F+ LN+ + + P GF F+++ ++A+ A +NG + LKV SR
Sbjct: 67 FEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAIDKLNGFTIGNKVLKVAFSR 124
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -1
Query: 431 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 324
P G F+ ++ EA+ A S+++GT G+T+ ++I
Sbjct: 173 PKGCGFVLYDKKAEAQAAISSLSGTFFPGSTMGLQI 208
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 425 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 315
GF F+ EN ++ ED +G E G LKV + K
Sbjct: 84 GFGFVTLENQEDLEDVTRKFDGFEYEGRRLKVAEASK 120
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -1
Query: 431 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 327
P G+ F E+++ + A A +NG E+ G L+V+
Sbjct: 65 PKGYGFCEYKDQETALSAMRNLNGYELNGRALRVD 99
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 434 NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 315
N GFAFI F + ++ A AMNG + + V + K
Sbjct: 140 NSKGFAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
>SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -1
Query: 440 ALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 318
A P G+AFIE+E+ ++ A +G ++ G + V++ R
Sbjct: 43 ASKPRGYAFIEYEHERDMHAAYKHADGKKIDGRRIVVDVER 83
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Frame = -1
Query: 506 GIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGA 342
G + ++++ F+++G +N + ++ + G+AF+EF + A+ A M+ M G
Sbjct: 108 GFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEFACDEVAKIAADTMHNYMMFGR 167
Query: 341 TLK 333
LK
Sbjct: 168 LLK 170
>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 325 ISTFKVAPNI-SVPFIALHASSASCKFSNSMKAKPGGFSATQTEFSFP 465
+S+ K+ P + S+ F AL +S A+ + SN + P G+SAT P
Sbjct: 508 LSSPKIDPLLDSLGFGALGSSFANTEISNVVAKSPSGYSATSPSRRLP 555
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAMN 363
L E I++ED+ + F +YG++ SV + + +F++F +++ A A + N
Sbjct: 13 LPENIREEDIVKHFTRYGRVESVKILPKRSAEGGRASFVDFVDIRSATKAHESPN 67
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 425 GFAFIEFENLQEAEDACSAMN 363
GFAFIEFE+ Q+AE N
Sbjct: 130 GFAFIEFESKQQAEHVVQMFN 150
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -2
Query: 289 SEVGAAVTSGVVVHSEVREEAGLTTH 212
S+VG+ VT +VVH +EEA L+ H
Sbjct: 35 SDVGSQVTLLLVVHESKKEEAKLSLH 60
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 431 PPGFAFIEFENLQEAEDACSAMNGT-EMLG 345
P GFAF+EF N +EA A A N E+ G
Sbjct: 623 PLGFAFVEFTNHKEALAALRATNNNPELFG 652
>SB_16080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 27.9 bits (59), Expect = 5.3
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = -1
Query: 515 LXEGIKKEDLER---EFDKYGKLNSVWVALNP--PGFAFIEFENLQEAEDACSAMNGTEM 351
L +K+EDL R F + G V+ + G AF+ F + + A A S +NG +
Sbjct: 121 LSNKVKEEDLIRLFLRFQQNGAPKLVFRLMKGRMKGQAFVTFPDSEVAIKAHSLVNGYRL 180
Query: 350 LGATLKVEISRK 315
G + +E RK
Sbjct: 181 KGRPVIIEFGRK 192
>SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 27.5 bits (58), Expect = 7.0
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 350 TSQYHSSRYTHLPPPASS 403
T++YH ++T LPPP+ S
Sbjct: 169 TTEYHPEQHTPLPPPSKS 186
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 425 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 321
GF F+ F EA A +NGT + G KVE+S
Sbjct: 125 GFGFVTFNTAAEANKAREKLNGTIVDGR--KVEVS 157
>SB_5211| Best HMM Match : 7tm_1 (HMM E-Value=0.015)
Length = 728
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -2
Query: 292 GSEVGAAVTSGVVVHSEVREEAGLTTHTVAAAAGR 188
G VGA++TS V +RE+ G TT+TV G+
Sbjct: 163 GVFVGASMTSVV---QRIREDLGATTYTVTCQYGK 194
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,695,982
Number of Sequences: 59808
Number of extensions: 176881
Number of successful extensions: 435
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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