Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_M04
(518 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 70 9e-13
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 70 9e-13
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 70 9e-13
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 50 1e-06
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 50 1e-06
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 50 1e-06
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 50 1e-06
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 50 1e-06
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 48 3e-06
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 45 3e-05
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 43 1e-04
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 43 2e-04
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 42 2e-04
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 42 3e-04
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 42 3e-04
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 42 3e-04
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 39 0.002
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 37 0.008
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 37 0.010
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 36 0.013
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 36 0.013
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 36 0.013
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 36 0.017
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 36 0.017
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 35 0.030
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 35 0.030
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 35 0.030
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 35 0.030
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 35 0.030
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 35 0.030
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 35 0.030
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 34 0.053
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 34 0.053
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 34 0.053
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 34 0.070
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 34 0.070
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 34 0.070
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 34 0.070
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 34 0.070
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 33 0.093
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 33 0.093
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 33 0.093
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 33 0.093
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 33 0.12
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 33 0.16
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 33 0.16
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 33 0.16
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 32 0.28
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 32 0.28
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 32 0.28
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 31 0.37
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 31 0.37
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 31 0.65
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 31 0.65
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 31 0.65
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 31 0.65
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 31 0.65
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 31 0.65
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 31 0.65
U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical p... 30 0.86
U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical p... 30 0.86
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 30 0.86
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 30 0.86
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 30 0.86
AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical ... 30 0.86
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 30 1.1
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 1.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 1.5
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 29 2.6
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 28 3.5
AF038618-2|AAB92072.1| 487|Caenorhabditis elegans Hypothetical ... 28 3.5
Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z70308-9|CAA94346.2| 402|Caenorhabditis elegans Hypothetical pr... 28 4.6
U39853-2|AAK39225.1| 771|Caenorhabditis elegans Kinase suppress... 27 6.1
U38820-1|AAA92436.1| 771|Caenorhabditis elegans KSR-1 protein. 27 6.1
S80647-1|AAB35769.1| 771|Caenorhabditis elegans KSR-1 protein. 27 6.1
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 70.1 bits (164), Expect = 9e-13
Identities = 26/58 (44%), Positives = 45/58 (77%)
Frame = -1
Query: 494 EDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 321
++LE FD++G++ VWVA PPGFAF+E++++++AEDA A++G+ + G +VE+S
Sbjct: 17 QELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 70.1 bits (164), Expect = 9e-13
Identities = 26/58 (44%), Positives = 45/58 (77%)
Frame = -1
Query: 494 EDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 321
++LE FD++G++ VWVA PPGFAF+E++++++AEDA A++G+ + G +VE+S
Sbjct: 17 QELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 70.1 bits (164), Expect = 9e-13
Identities = 26/58 (44%), Positives = 45/58 (77%)
Frame = -1
Query: 494 EDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 321
++LE FD++G++ VWVA PPGFAF+E++++++AEDA A++G+ + G +VE+S
Sbjct: 17 QELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/63 (38%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Frame = -1
Query: 500 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLK--VE 327
++ D+ER YGK+N++ + GFAF++FE+ ++AEDAC ++G M G++++ VE
Sbjct: 14 RERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVE 70
Query: 326 ISR 318
++R
Sbjct: 71 MAR 73
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/63 (38%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Frame = -1
Query: 500 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLK--VE 327
++ D+ER YGK+N++ + GFAF++FE+ ++AEDAC ++G M G++++ VE
Sbjct: 14 RERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVE 70
Query: 326 ISR 318
++R
Sbjct: 71 MAR 73
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/63 (38%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Frame = -1
Query: 500 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLK--VE 327
++ D+ER YGK+N++ + GFAF++FE+ ++AEDAC ++G M G++++ VE
Sbjct: 14 RERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVE 70
Query: 326 ISR 318
++R
Sbjct: 71 MAR 73
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNP-PGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 327
++++++E F KYG++ V + P FAF+EFE+ ++AEDA A +G E G ++VE
Sbjct: 20 VREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVE 79
Query: 326 ISR 318
+R
Sbjct: 80 FTR 82
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNP-PGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 327
++++++E F KYG++ V + P FAF+EFE+ ++AEDA A +G E G ++VE
Sbjct: 20 VREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVE 79
Query: 326 ISR 318
+R
Sbjct: 80 FTR 82
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 48.4 bits (110), Expect = 3e-06
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = -1
Query: 488 LEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 324
+E F G + S+W+A PPGFAF+ F+ A DA +NG ++ KVE+
Sbjct: 44 IEAVFSVMGPIKSIWMAKRPPGFAFVTFKRTVHAFDAVKYLNGKKICDLEAKVEM 98
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 45.6 bits (103), Expect = 2e-05
Identities = 23/67 (34%), Positives = 40/67 (59%)
Frame = -1
Query: 518 RLXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGAT 339
RL + ++D+E F YG++ V L GF F+EF++ ++AEDA +NG E+ G
Sbjct: 9 RLTSRVSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDDKRDAEDAVHDLNGKELGGER 65
Query: 338 LKVEISR 318
+ ++ S+
Sbjct: 66 VILDYSK 72
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 45.6 bits (103), Expect = 2e-05
Identities = 23/67 (34%), Positives = 40/67 (59%)
Frame = -1
Query: 518 RLXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGAT 339
RL + ++D+E F YG++ V L GF F+EF++ ++AEDA +NG E+ G
Sbjct: 9 RLTSRVSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDDKRDAEDAVHDLNGKELGGER 65
Query: 338 LKVEISR 318
+ ++ S+
Sbjct: 66 VILDYSK 72
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 45.6 bits (103), Expect = 2e-05
Identities = 23/67 (34%), Positives = 40/67 (59%)
Frame = -1
Query: 518 RLXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGAT 339
RL + ++D+E F YG++ V L GF F+EF++ ++AEDA +NG E+ G
Sbjct: 9 RLTSRVSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDDKRDAEDAVHDLNGKELGGER 65
Query: 338 LKVEISR 318
+ ++ S+
Sbjct: 66 VILDYSK 72
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 45.2 bits (102), Expect = 3e-05
Identities = 23/68 (33%), Positives = 38/68 (55%)
Frame = -1
Query: 518 RLXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGAT 339
RL D+E F YGKL+ V + GF F++F++ ++A+DA +NG E+ G
Sbjct: 8 RLPNRASDRDVEHFFRGYGKLSDV---IMKNGFGFVDFQDQRDADDAVHDLNGKELCGER 64
Query: 338 LKVEISRK 315
+ +E R+
Sbjct: 65 VILEFPRR 72
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNGTEM 351
+ E ++D+ +F +YGK+ ++ + L+ G+A +E+E +EA +A N T++
Sbjct: 62 IHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTDL 121
Query: 350 LGATLKVE 327
LG +KV+
Sbjct: 122 LGQNVKVD 129
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Frame = -1
Query: 497 KEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 333
+E+L F G++N+V + + P GFAFIEF A+ A MNG E G L+
Sbjct: 18 EEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLR 77
Query: 332 VEISRK 315
V ++ K
Sbjct: 78 VNLANK 83
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = -1
Query: 497 KEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 327
KE LE+ F K+G + S V GF F+ F N +EAE A A++ + + G LK+
Sbjct: 226 KETLEKVFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLH 285
Query: 326 ISR 318
+ R
Sbjct: 286 VCR 288
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = -1
Query: 497 KEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 327
KE LE+ F K+G + S V GF F+ F N +EAE A A++ + + G LK+
Sbjct: 166 KETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLH 225
Query: 326 ISR 318
+ R
Sbjct: 226 VCR 228
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = -1
Query: 497 KEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 327
KE LE+ F K+G + S V GF F+ F N +EAE A A++ + + G LK+
Sbjct: 163 KETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLH 222
Query: 326 ISR 318
+ R
Sbjct: 223 VCR 225
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = -1
Query: 497 KEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 327
KE LE+ F K+G + S V GF F+ F N +EAE A A++ + + G LK+
Sbjct: 226 KETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLH 285
Query: 326 ISR 318
+ R
Sbjct: 286 VCR 288
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEM 351
L + + +++L F K G++ +++A + P GFAF+ FE+ +A A + +N M
Sbjct: 183 LPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELNDIRM 242
Query: 350 LGATLKVEISR 318
LKVE +R
Sbjct: 243 YHMVLKVEWTR 253
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 37.1 bits (82), Expect = 0.008
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = -1
Query: 518 RLXEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAMNGTEM 351
R+ + L REF+ YGK+ + + A P G+AFIE+ + E A +G ++
Sbjct: 110 RINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKADGIKV 169
Query: 350 LGATLKVEISR 318
G L V+ R
Sbjct: 170 DGKRLVVDYER 180
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 36.7 bits (81), Expect = 0.010
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -1
Query: 431 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 327
P G+ FIEF ++Q AE A +NG E+ G L+V+
Sbjct: 58 PKGYGFIEFPDIQTAEVAIRNLNGYELSGRILRVD 92
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 36.3 bits (80), Expect = 0.013
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGAT 339
I+++ L R FD +G + S+ ++ +P FAF+E+E + A A +MNG + G
Sbjct: 113 IREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRN 172
Query: 338 LKV 330
LKV
Sbjct: 173 LKV 175
Score = 31.5 bits (68), Expect = 0.37
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGAT 339
+ + DL+ F+ +G++ +A P G F ++EF NL +A + MN ++ G
Sbjct: 218 LSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQY 277
Query: 338 LK 333
L+
Sbjct: 278 LR 279
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 36.3 bits (80), Expect = 0.013
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGAT 339
I+++ L R FD +G + S+ ++ +P FAF+E+E + A A +MNG + G
Sbjct: 113 IREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRN 172
Query: 338 LKV 330
LKV
Sbjct: 173 LKV 175
Score = 33.1 bits (72), Expect = 0.12
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGAT 339
+ + DL+ F+ +G++ +A P G F ++EF NL +A + MN ++ G
Sbjct: 218 LSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQY 277
Query: 338 LKV 330
L+V
Sbjct: 278 LRV 280
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 36.3 bits (80), Expect = 0.013
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGAT 339
I+++ L R FD +G + S+ ++ +P FAF+E+E + A A +MNG + G
Sbjct: 113 IREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRN 172
Query: 338 LKV 330
LKV
Sbjct: 173 LKV 175
Score = 33.1 bits (72), Expect = 0.12
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGAT 339
+ + DL+ F+ +G++ +A P G F ++EF NL +A + MN ++ G
Sbjct: 218 LSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQY 277
Query: 338 LKV 330
L+V
Sbjct: 278 LRV 280
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 35.9 bits (79), Expect = 0.017
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = -1
Query: 497 KEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 333
++DL F + G +++V + + P GFAF+EF A+ A NG + G L+
Sbjct: 17 EDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALR 76
Query: 332 VEISR 318
V +++
Sbjct: 77 VNLAQ 81
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 35.9 bits (79), Expect = 0.017
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = -1
Query: 497 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 333
++++ R FD++G +N V G+AF++FE + A A MN ++ G ++
Sbjct: 268 EDEIRRAFDRFGPINEVRT-FKIQGYAFVKFETKESAARAIVQMNNADIGGQIVR 321
Score = 29.5 bits (63), Expect = 1.5
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYG---KLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 345
L I E L F++ G K ++ LN P +AF+EF + +A A + NG E+L
Sbjct: 47 LDPAITDEFLATLFNQIGAVMKAKIIFEGLNDP-YAFVEFSDHNQATLALQSHNGRELLE 105
Query: 344 ATLKV 330
+ V
Sbjct: 106 KEMHV 110
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 35.1 bits (77), Expect = 0.030
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = -1
Query: 497 KEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 333
+E++ F G +N+V + + P GFAF+EF A+ A +NG G L+
Sbjct: 19 EEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLR 78
Query: 332 VEISRK 315
V + K
Sbjct: 79 VNYANK 84
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 35.1 bits (77), Expect = 0.030
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -1
Query: 422 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 324
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 378 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 410
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 35.1 bits (77), Expect = 0.030
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -1
Query: 422 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 324
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 35.1 bits (77), Expect = 0.030
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -1
Query: 422 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 324
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 35.1 bits (77), Expect = 0.030
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -1
Query: 422 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 324
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 471 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 503
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 35.1 bits (77), Expect = 0.030
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -1
Query: 422 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 324
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 35.1 bits (77), Expect = 0.030
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -1
Query: 425 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 318
GF F+EF+ ++A A MN +E+ G T++V +R
Sbjct: 53 GFGFVEFDMAEDAAMAIDNMNESELFGKTIRVNFAR 88
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 34.3 bits (75), Expect = 0.053
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -1
Query: 425 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
G+AF+ N EA +A ++NGT + G TL+V
Sbjct: 415 GYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQV 446
Score = 30.3 bits (65), Expect = 0.86
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEM 351
L +G+ +E++ F G++ S + + G+ F+ + ++A A S+ NG +
Sbjct: 49 LPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRL 108
Query: 350 LGATLKVEISR 318
T+KV +R
Sbjct: 109 QNKTIKVSYAR 119
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 34.3 bits (75), Expect = 0.053
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = -1
Query: 491 DLEREFDKYGKLNSVWVALN---PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
DL+ F+K+G ++ V + N GF F+ E Q+AE A ++G+ + G ++V
Sbjct: 168 DLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEV 224
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 34.3 bits (75), Expect = 0.053
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = -1
Query: 491 DLEREFDKYGKLNSVWVALN---PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
DL+ F+K+G ++ V + N GF F+ E Q+AE A ++G+ + G ++V
Sbjct: 168 DLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEV 224
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 33.9 bits (74), Expect = 0.070
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = -1
Query: 509 EGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMNGTEMLGA 342
E + +E L F K+G++ S V + P GF F+ F + A A +N + + G
Sbjct: 247 EHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGT 306
Query: 341 TLKVEISR 318
K+ + R
Sbjct: 307 DCKLSVCR 314
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 33.9 bits (74), Expect = 0.070
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = -1
Query: 509 EGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMNGTEMLGA 342
E + +E L F K+G++ S V + P GF F+ F + A A +N + + G
Sbjct: 247 EHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGT 306
Query: 341 TLKVEISR 318
K+ + R
Sbjct: 307 DCKLSVCR 314
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 33.9 bits (74), Expect = 0.070
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -1
Query: 500 KKEDLEREFDKYGKLNSVWVALNP---PGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
++ DL F+K G + V + N GF F+ +N +A+ A + NGT + G ++V
Sbjct: 112 REPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEV 171
Query: 329 EIS 321
++
Sbjct: 172 NLA 174
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 33.9 bits (74), Expect = 0.070
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNP------PGFAFIEFENLQEAEDACSAMNGTE 354
L + K LE F YG + +V + + G+ ++E++NL++AE + M+G +
Sbjct: 140 LSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIKHMDGGQ 199
Query: 353 MLGATLKVEIS 321
+ G + VE++
Sbjct: 200 IDGMAVHVEMT 210
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 33.9 bits (74), Expect = 0.070
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -1
Query: 500 KKEDLEREFDKYGKLNSVWVALNP---PGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
++ DL F+K G + V + N GF F+ +N +A+ A + NGT + G ++V
Sbjct: 112 REPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEV 171
Query: 329 EIS 321
++
Sbjct: 172 NLA 174
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 33.5 bits (73), Expect = 0.093
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGA-T 339
L + E LE F+++ L + + N PG AF+EF+ A A + +N ++ T
Sbjct: 139 LPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFKISAEHT 198
Query: 338 LKVEISRK 315
++V+ ++K
Sbjct: 199 MRVDYAKK 206
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 33.5 bits (73), Expect = 0.093
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 324
I ++D+ F +GK+ +V GF F++F A+++C ++NG L V +
Sbjct: 95 ITRDDIIELFRPFGKIIAVNYFAQQ-GFGFVQFNEAGSADESCRSLNGMSWKACCLDVHL 153
Query: 323 S 321
+
Sbjct: 154 A 154
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 33.5 bits (73), Expect = 0.093
Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = -1
Query: 476 FDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 315
F+ +G++ + + ++ GFA I F N +A+ +C +N E+ G +++ I ++
Sbjct: 147 FESFGRIEKIDLEVDSNRENRGFATITFRNADDAQKSCEQLNNFELAGRCIRLSIKQE 204
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 33.5 bits (73), Expect = 0.093
Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = -1
Query: 476 FDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 315
F+ +G++ + + ++ GFA I F N +A+ +C +N E+ G +++ I ++
Sbjct: 292 FESFGRIEKIDLEVDSNRENRGFATITFRNADDAQKSCEQLNNFELAGRCIRLSIKQE 349
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 33.1 bits (72), Expect = 0.12
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = -1
Query: 500 KKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNGTEMLGATL 336
K++DL+ F KYG+++ V V ++ GFA +EF + A A SA++G G +
Sbjct: 291 KEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDGYVFKGRMM 350
Query: 335 KV 330
+
Sbjct: 351 HI 352
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 32.7 bits (71), Expect = 0.16
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 425 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
GFA++ FEN Q+ A S +NG + LKV
Sbjct: 54 GFAYVTFENEQQMNTAISGLNGADFGNRVLKV 85
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 32.7 bits (71), Expect = 0.16
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -1
Query: 500 KKEDLEREFDKYGKLNSVWVALN---PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
+++DL F YG++ SV + N GF F+ ++++ E A +A++ + + G ++V
Sbjct: 63 REQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKARAALHESHVQGRIIEV 122
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 32.7 bits (71), Expect = 0.16
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -1
Query: 500 KKEDLEREFDKYGKLNSVWVALN---PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
+++DL F YG++ SV + N GF F+ ++++ E A +A++ + + G ++V
Sbjct: 63 REQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKARAALHESHVQGRIIEV 122
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 31.9 bits (69), Expect = 0.28
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = -1
Query: 494 EDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
EDLE F ++GK+N+ + + +AFIEF+N + E A M+ + + V
Sbjct: 255 EDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHV 314
Query: 329 EISR 318
+ S+
Sbjct: 315 DFSQ 318
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 31.9 bits (69), Expect = 0.28
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = -1
Query: 494 EDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
EDLE F ++GK+N+ + + +AFIEF+N + E A M+ + + V
Sbjct: 255 EDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHV 314
Query: 329 EISR 318
+ S+
Sbjct: 315 DFSQ 318
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 31.9 bits (69), Expect = 0.28
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = -1
Query: 494 EDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
EDLE F ++GK+N+ + + +AFIEF+N + E A M+ + + V
Sbjct: 186 EDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHV 245
Query: 329 EISR 318
+ S+
Sbjct: 246 DFSQ 249
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 31.5 bits (68), Expect = 0.37
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -1
Query: 422 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 318
F F+ ++N+ ++ A +AMNG ++ LKV++ R
Sbjct: 472 FGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQLKR 506
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 31.5 bits (68), Expect = 0.37
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -1
Query: 422 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 318
F F+ ++N+ ++ A +AMNG ++ LKV++ R
Sbjct: 472 FGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQLKR 506
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 30.7 bits (66), Expect = 0.65
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Frame = -1
Query: 506 GIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGA 342
G E++E+ F G ++ V + + P GFA++EF + ++A AM + + G
Sbjct: 88 GATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNAL-AMTDSLLRGR 146
Query: 341 TLKVEISR 318
+KV+ R
Sbjct: 147 QIKVDPKR 154
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 30.7 bits (66), Expect = 0.65
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -1
Query: 491 DLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 318
DL F YG + V + +AF+ +E + A A MNG EM G ++ R
Sbjct: 252 DLRDLFSTYGDIAEVRI-FKTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVRCSWGR 308
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 30.7 bits (66), Expect = 0.65
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -1
Query: 476 FDKYGKLNSVWVALNP---PGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 321
F+K G + V + N GF F+ +N +A+ A + NGT + G ++V ++
Sbjct: 2 FEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 56
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 30.7 bits (66), Expect = 0.65
Identities = 13/57 (22%), Positives = 31/57 (54%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 333
+ ++++ + F +G++ V + G+AF++F+N A A MN ++ G ++
Sbjct: 138 LTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVR 193
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 30.7 bits (66), Expect = 0.65
Identities = 13/57 (22%), Positives = 31/57 (54%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 333
+ ++++ + F +G++ V + G+AF++F+N A A MN ++ G ++
Sbjct: 148 LTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVR 203
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 30.7 bits (66), Expect = 0.65
Identities = 13/57 (22%), Positives = 31/57 (54%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 333
+ ++++ + F +G++ V + G+AF++F+N A A MN ++ G ++
Sbjct: 251 LTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVR 306
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 30.7 bits (66), Expect = 0.65
Identities = 13/57 (22%), Positives = 31/57 (54%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 333
+ ++++ + F +G++ V + G+AF++F+N A A MN ++ G ++
Sbjct: 219 LTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVR 274
>U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical
protein C44B7.2b protein.
Length = 339
Score = 30.3 bits (65), Expect = 0.86
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = -1
Query: 419 AFIEFENLQEAEDACSAMNGTEMLG--ATLKVEISR 318
A +EFE+++ A+ A AMNG ++ TLKVE ++
Sbjct: 163 ALVEFESMEVAKAAKHAMNGADIYSGCCTLKVEFAK 198
>U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical
protein C44B7.2a protein.
Length = 597
Score = 30.3 bits (65), Expect = 0.86
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = -1
Query: 419 AFIEFENLQEAEDACSAMNGTEMLG--ATLKVEISR 318
A +EFE+++ A+ A AMNG ++ TLKVE ++
Sbjct: 163 ALVEFESMEVAKAAKHAMNGADIYSGCCTLKVEFAK 198
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 30.3 bits (65), Expect = 0.86
Identities = 12/46 (26%), Positives = 28/46 (60%)
Frame = -1
Query: 497 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 360
KE L++ F ++G + ++ P +A++ +EN +++AC ++ G
Sbjct: 264 KEILQKAFGEFGFVENIDYDHGQP-YAYVVYENTHTSQEACRSLRG 308
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 30.3 bits (65), Expect = 0.86
Identities = 12/46 (26%), Positives = 28/46 (60%)
Frame = -1
Query: 497 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 360
KE L++ F ++G + ++ P +A++ +EN +++AC ++ G
Sbjct: 264 KEILQKAFGEFGFVENIDYDHGQP-YAYVVYENTHTSQEACRSLRG 308
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 30.3 bits (65), Expect = 0.86
Identities = 12/46 (26%), Positives = 28/46 (60%)
Frame = -1
Query: 497 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 360
KE L++ F ++G + ++ P +A++ +EN +++AC ++ G
Sbjct: 241 KEILQKAFGEFGFVENIDYDHGQP-YAYVVYENTHTSQEACRSLRG 285
>AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical
protein Y65B4A.1 protein.
Length = 442
Score = 30.3 bits (65), Expect = 0.86
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -1
Query: 497 KEDLEREFDKYGKLNSVWVALN-PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 324
KE++ + KYG + V V N P G + F +E++ A ++G + G L E+
Sbjct: 335 KEEMTQSCQKYGIVKKVVVYANHPDGVVSVTFPTTEESDMAVKYLHGRVVDGRKLTAEL 393
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 363
+ EG + E ++ F ++ L V N FAFIE+E+ +E A A++
Sbjct: 150 IPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALD 200
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 443 VALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
V N GF F+EF ++A+ A +N ++ G +KV
Sbjct: 49 VTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKV 86
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 425 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 315
GFAFI F + + ++ A AMNG + + V + K
Sbjct: 143 GFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK 179
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 443 VALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
V N GF F+EF ++A+ A +N ++ G +KV
Sbjct: 59 VTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKV 96
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 425 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 315
GFAFI F + + ++ A AMNG + + V + K
Sbjct: 153 GFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK 189
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVA--LNPPGFAFIEFENLQEAEDACSAMNG 360
I E++ F K+G + + V G AF+ +E++ +A+ AC ++G
Sbjct: 30 ITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKTACEHLSG 79
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = -1
Query: 518 RLXEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNG 360
R+ G +++L F ++G + + VA N G+A++ F+N AE A +MNG
Sbjct: 38 RIPFGFFEKELLGYFRQFGNVLRIRVARNRRTGNHKGWAYVGFDNKAVAEIAAESMNG 95
>AF038618-2|AAB92072.1| 487|Caenorhabditis elegans Hypothetical
protein F42G8.8 protein.
Length = 487
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -1
Query: 431 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 327
P GF F + L A MN T+ GATLKVE
Sbjct: 277 PEGFKFFADQKLLTIFSAPRYMNETDNHGATLKVE 311
>Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical
protein F35E8.7 protein.
Length = 288
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -2
Query: 316 SGTGPAEVGSEVGAAVTSGVVVHSEVREEAGLTTHTVAAAAGRT 185
S PA + V AV + + V A +TT TVAAAA T
Sbjct: 199 STAAPAAPTTTVAPAVVTTTAAPAAVTTTAAVTTTTVAAAAATT 242
>Z70308-9|CAA94346.2| 402|Caenorhabditis elegans Hypothetical
protein F49E11.7 protein.
Length = 402
Score = 27.9 bits (59), Expect = 4.6
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -1
Query: 431 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 315
P GF F + L A MN T+ GATL+VE K
Sbjct: 296 PEGFKFFADQKLLTIFSAPRYMNETDNHGATLRVETDGK 334
>U39853-2|AAK39225.1| 771|Caenorhabditis elegans Kinase suppressor
of activatedras protein 1 protein.
Length = 771
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +1
Query: 346 PNISVPFIALHASSASCKFSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIP 507
P P A+ +SS++ + S A P G S + + PY RS FL P
Sbjct: 307 PAFQFPDTAIDSSSSTNSSAPSTPALPAGISGNVSSLTAPY----RSERKFLFP 356
>U38820-1|AAA92436.1| 771|Caenorhabditis elegans KSR-1 protein.
Length = 771
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +1
Query: 346 PNISVPFIALHASSASCKFSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIP 507
P P A+ +SS++ + S A P G S + + PY RS FL P
Sbjct: 307 PAFQFPDTAIDSSSSTNSSAPSTPALPAGISGNVSSLTAPY----RSERKFLFP 356
>S80647-1|AAB35769.1| 771|Caenorhabditis elegans KSR-1 protein.
Length = 771
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +1
Query: 346 PNISVPFIALHASSASCKFSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIP 507
P P A+ +SS++ + S A P G S + + PY RS FL P
Sbjct: 307 PAFQFPDTAIDSSSSTNSSAPSTPALPAGISGNVSSLTAPY----RSERKFLFP 356
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,838,260
Number of Sequences: 27780
Number of extensions: 124214
Number of successful extensions: 425
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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