Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_M04
(518 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 55 2e-08
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 54 6e-08
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 54 6e-08
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 54 6e-08
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 48 3e-06
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 48 3e-06
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 48 3e-06
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 48 3e-06
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 48 4e-06
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 48 4e-06
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 47 7e-06
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 46 1e-05
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 44 5e-05
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 44 6e-05
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 44 6e-05
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 44 8e-05
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 44 8e-05
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 43 1e-04
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 43 1e-04
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 42 2e-04
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 42 2e-04
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 42 3e-04
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 41 6e-04
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 41 6e-04
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 41 6e-04
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 39 0.002
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 39 0.002
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 39 0.002
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 39 0.002
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 39 0.002
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 39 0.002
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 39 0.002
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 39 0.002
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 39 0.002
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 38 0.003
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 38 0.003
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 38 0.003
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 37 0.007
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 37 0.007
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 37 0.009
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 37 0.009
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 37 0.009
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 36 0.016
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 36 0.022
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 35 0.029
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 35 0.029
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 35 0.029
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 35 0.029
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 35 0.029
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 35 0.029
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 35 0.038
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 35 0.038
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 34 0.050
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 34 0.066
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 34 0.066
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 33 0.087
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 33 0.087
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 33 0.087
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 33 0.12
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 33 0.12
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 33 0.12
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 33 0.12
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 33 0.12
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 33 0.12
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 33 0.15
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 33 0.15
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 32 0.20
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 32 0.20
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 32 0.20
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 32 0.20
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 32 0.20
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 32 0.20
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 32 0.20
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 32 0.20
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 32 0.20
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 31 0.35
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 31 0.35
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 31 0.47
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 31 0.47
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 31 0.47
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 31 0.47
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 31 0.47
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 31 0.47
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 31 0.47
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 31 0.61
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 31 0.61
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 31 0.61
At1g67550.1 68414.m07696 urease, putative / urea amidohydrolase,... 31 0.61
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 30 0.81
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 30 0.81
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 30 0.81
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 30 1.1
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 30 1.1
At3g61130.1 68416.m06841 glycosyl transferase family 8 protein c... 30 1.1
At2g47310.1 68415.m05906 flowering time control protein-related ... 30 1.1
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 30 1.1
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 29 1.4
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 29 1.4
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 29 1.4
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 29 1.4
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 29 1.4
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 29 1.4
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 29 1.4
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 29 1.4
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 29 1.4
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 29 1.4
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 29 1.9
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 29 1.9
At5g03480.1 68418.m00304 expressed protein ; expression support... 29 2.5
At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing ... 29 2.5
At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing ... 29 2.5
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 29 2.5
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 29 2.5
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 29 2.5
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 29 2.5
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 28 3.3
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 28 3.3
At1g79880.3 68414.m09332 La domain-containing protein contains P... 28 3.3
At1g79880.2 68414.m09331 La domain-containing protein contains P... 28 3.3
At1g79880.1 68414.m09333 La domain-containing protein contains P... 28 3.3
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 28 3.3
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 28 4.3
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 28 4.3
At1g35420.1 68414.m04394 dienelactone hydrolase family protein l... 27 5.7
At5g56180.2 68418.m07009 actin-related protein, putative (ARP8) ... 27 7.6
At5g56180.1 68418.m07008 actin-related protein, putative (ARP8) ... 27 7.6
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 27 7.6
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 55.2 bits (127), Expect = 2e-08
Identities = 22/48 (45%), Positives = 35/48 (72%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 360
+ + +LE EF +G + SVWVA PPG+AF++FE+ ++A DA A++G
Sbjct: 13 VTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 54.0 bits (124), Expect = 6e-08
Identities = 21/48 (43%), Positives = 34/48 (70%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 360
+ + +LE EF +G + SVWVA PPG+AF++FE+ ++A DA ++G
Sbjct: 13 VTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 54.0 bits (124), Expect = 6e-08
Identities = 22/47 (46%), Positives = 35/47 (74%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 363
+ + +LE EF +G L +VWVA PPG+AF+EF++ ++A DA SA++
Sbjct: 13 VTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 54.0 bits (124), Expect = 6e-08
Identities = 22/47 (46%), Positives = 35/47 (74%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 363
+ + +LE EF +G L +VWVA PPG+AF+EF++ ++A DA SA++
Sbjct: 13 VTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 48.4 bits (110), Expect = 3e-06
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
I+K ++E F KYG + + + + PPG+AF+EFE+ ++A+DA +G + G L+V
Sbjct: 18 IRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGYDFDGCRLRV 77
Query: 329 EIS 321
EI+
Sbjct: 78 EIA 80
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 48.4 bits (110), Expect = 3e-06
Identities = 22/63 (34%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
I++ ++E F KYG + + + + PPG+AF+EF++ ++AEDA +G + G L+V
Sbjct: 18 IREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRV 77
Query: 329 EIS 321
E++
Sbjct: 78 ELA 80
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 48.4 bits (110), Expect = 3e-06
Identities = 22/63 (34%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
I++ ++E F KYG + + + + PPG+AF+EF++ ++AEDA +G + G L+V
Sbjct: 18 IREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRV 77
Query: 329 EIS 321
E++
Sbjct: 78 ELA 80
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 48.4 bits (110), Expect = 3e-06
Identities = 22/63 (34%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
I++ ++E F KYG + + + + PPG+AF+EF++ ++AEDA +G + G L+V
Sbjct: 18 IREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRV 77
Query: 329 EIS 321
E++
Sbjct: 78 ELA 80
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 48.0 bits (109), Expect = 4e-06
Identities = 22/63 (34%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
I++ ++E F KYG + + + + PPG+AF+EFE+ ++A+DA +G + G L+V
Sbjct: 18 IREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGYDFDGHHLRV 77
Query: 329 EIS 321
E++
Sbjct: 78 ELA 80
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 48.0 bits (109), Expect = 4e-06
Identities = 22/63 (34%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
I++ ++E F KYG + + + + PPG+AF+EFE+ ++A+DA +G + G L+V
Sbjct: 18 IREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGYDFDGHHLRV 77
Query: 329 EIS 321
E++
Sbjct: 78 ELA 80
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 47.2 bits (107), Expect = 7e-06
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = -1
Query: 497 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 345
KED++ E K+GKLN ++V N GF ++ FEN Q A A A++G G
Sbjct: 488 KEDVKEECSKFGKLNHIFVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAG 538
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 46.4 bits (105), Expect = 1e-05
Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
I++ ++E F KYG++ + + + PP + F+EFE+ ++AEDA +G + G L+V
Sbjct: 18 IREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGYNLDGCRLRV 77
Query: 329 EIS 321
E++
Sbjct: 78 ELA 80
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 44.4 bits (100), Expect = 5e-05
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATL 336
L + DLE F YG++ + N F+EF +++ A+ A A+N TE+ G +
Sbjct: 229 LAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALNRTEIAGKRI 288
Query: 335 KVEISR 318
K+E SR
Sbjct: 289 KLEHSR 294
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 44.0 bits (99), Expect = 6e-05
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = -1
Query: 509 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
+ + DLER F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 106 QNTRTRDLERHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDATNSSKLMDKVISV 162
Query: 329 EISRK 315
E + K
Sbjct: 163 EYAVK 167
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = -1
Query: 500 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE--MLGATLKVE 327
++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A++ E G L+VE
Sbjct: 14 RESDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVE 70
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 44.0 bits (99), Expect = 6e-05
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = -1
Query: 509 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
+ + DLER F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 106 QNTRTRDLERHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDATNSSKLMDKVISV 162
Query: 329 EISRK 315
E + K
Sbjct: 163 EYAVK 167
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = -1
Query: 500 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE--MLGATLKVE 327
++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A++ E G L+VE
Sbjct: 14 RESDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVE 70
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 43.6 bits (98), Expect = 8e-05
Identities = 23/67 (34%), Positives = 40/67 (59%)
Frame = -1
Query: 518 RLXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGAT 339
RL + DLER F +YG++ V + + +AF+EF + ++A+DA ++G + G+
Sbjct: 17 RLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFSDPRDADDARYYLDGRDFDGSR 73
Query: 338 LKVEISR 318
+ VE SR
Sbjct: 74 ITVEASR 80
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 43.6 bits (98), Expect = 8e-05
Identities = 23/67 (34%), Positives = 40/67 (59%)
Frame = -1
Query: 518 RLXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGAT 339
RL + DLER F +YG++ V + + +AF+EF + ++A+DA ++G + G+
Sbjct: 17 RLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFGDPRDADDARHYLDGRDFDGSR 73
Query: 338 LKVEISR 318
+ VE SR
Sbjct: 74 ITVEFSR 80
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 42.7 bits (96), Expect = 1e-04
Identities = 21/65 (32%), Positives = 38/65 (58%)
Frame = -1
Query: 509 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
+ + DLE+ F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 66 DNTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDASNNSKLMDKVISV 122
Query: 329 EISRK 315
E + K
Sbjct: 123 EYAVK 127
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 42.7 bits (96), Expect = 1e-04
Identities = 21/65 (32%), Positives = 38/65 (58%)
Frame = -1
Query: 509 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
+ + DLE+ F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 107 DNTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDASNNSKLMDKVISV 163
Query: 329 EISRK 315
E + K
Sbjct: 164 EYAVK 168
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = -1
Query: 500 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM--LGATLKVE 327
++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A++ E G L+VE
Sbjct: 14 REGDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVE 70
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/62 (32%), Positives = 37/62 (59%)
Frame = -1
Query: 500 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 321
K+ D+E+ F+ YGK+ +V + N F+F++FE ++A A A +++L + VE +
Sbjct: 106 KEHDIEKHFEPYGKVTNVRIRRN---FSFVQFETQEDATKALEATQRSKILDRVVSVEYA 162
Query: 320 RK 315
K
Sbjct: 163 LK 164
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/41 (46%), Positives = 30/41 (73%)
Frame = -1
Query: 500 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 378
++ DLER FDKYG+++ V + G+AF+ FE+ ++AEDA
Sbjct: 14 RQSDLERLFDKYGRVDRVDM---KSGYAFVYFEDERDAEDA 51
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Frame = -1
Query: 509 EGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNGTEMLG 345
E ++ED+ F +G++ ++ + L+ G+A IE+E +EA+ A SAMNG E+L
Sbjct: 104 EETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLT 163
Query: 344 ATLKVE 327
+ V+
Sbjct: 164 QNVSVD 169
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 41.5 bits (93), Expect = 3e-04
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAMNGTEML 348
L + + E L+ F +YG + S V LNP GF F+ + N +EA A S MNG +M+
Sbjct: 339 LDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNG-KMI 397
Query: 347 G 345
G
Sbjct: 398 G 398
Score = 32.7 bits (71), Expect = 0.15
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMNGTEML 348
L + I +++L + F K+G ++S V + G F F+ FE + A A MNG +
Sbjct: 236 LPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLG 295
Query: 347 GATLKVEISRK 315
L V ++K
Sbjct: 296 DDVLYVGRAQK 306
Score = 28.3 bits (60), Expect = 3.3
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMNGTEM 351
L I + L F +G + S VA++ G+ F++FE + A+ A +NG M
Sbjct: 143 LDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLM 201
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 425 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 315
G+A+I F N +A A A+N T + +++ +S +
Sbjct: 90 GYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNR 126
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 40.7 bits (91), Expect = 6e-04
Identities = 23/62 (37%), Positives = 36/62 (58%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 324
+ K+DLE EF K+GK+ + L AFI++ + +A A +MNG M G+ L+V+
Sbjct: 261 VSKDDLEEEFSKFGKIED-FRFLRERKTAFIDYYEMDDALQA-KSMNGKPMGGSFLRVDF 318
Query: 323 SR 318
R
Sbjct: 319 LR 320
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 40.7 bits (91), Expect = 6e-04
Identities = 19/62 (30%), Positives = 37/62 (59%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 324
+ ++L + F YG++ + N FIE+ ++++AE A A+N +E+ G +K+E+
Sbjct: 281 VSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 340
Query: 323 SR 318
SR
Sbjct: 341 SR 342
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 40.7 bits (91), Expect = 6e-04
Identities = 19/62 (30%), Positives = 37/62 (59%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 324
+ ++L + F YG++ + N FIE+ ++++AE A A+N +E+ G +K+E+
Sbjct: 294 VSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 353
Query: 323 SR 318
SR
Sbjct: 354 SR 355
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Frame = -1
Query: 506 GIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGA 342
G K+ L R F+K+G++ ++ +P G A+IEF + AE+A S ++GT +
Sbjct: 526 GATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS-LDGTSFMSR 584
Query: 341 TLKV 330
LK+
Sbjct: 585 ILKI 588
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATL 336
L I E+L F YG++ V ++ +IEF ++++A+ A +NG E+ G L
Sbjct: 302 LDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVALQGLNGLEVAGRQL 361
Query: 335 KV 330
K+
Sbjct: 362 KL 363
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/59 (32%), Positives = 36/59 (61%)
Frame = -1
Query: 494 EDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 318
EDL + F ++G++ SV + + G F++F + + AEDA ++NGT + T+++ R
Sbjct: 335 EDLRQPFSQFGEVVSVKIPVGK-GCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGR 392
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEM 351
L ++EDL R F+++G + +++ + P GF FI+F + +A +A M+G +
Sbjct: 44 LRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLL 103
Query: 350 LGATLKV 330
LG L V
Sbjct: 104 LGRELTV 110
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGAT 339
+ + LE FD+YGK+ + + P GF FI F + + A+DA M+G E+
Sbjct: 23 VTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKV 82
Query: 338 LKV 330
+ V
Sbjct: 83 ISV 85
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGAT 339
+ + LE FD+YGK+ + + P GF FI F + + A+DA M+G E+
Sbjct: 23 VTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKV 82
Query: 338 LKV 330
+ V
Sbjct: 83 ISV 85
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEM 351
L ++EDL + F+++G + +++ + P GF F++F + +A DA M+G +
Sbjct: 43 LRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLL 102
Query: 350 LGATLKV 330
LG L V
Sbjct: 103 LGRELTV 109
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATL 336
L I +DL F +G++ + + F+EF +++ AE A A+N E+ G +
Sbjct: 260 LDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRI 319
Query: 335 KVEISR 318
KVE SR
Sbjct: 320 KVEPSR 325
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/65 (16%), Positives = 29/65 (44%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATL 336
+ ++ +L F++YG + +++ GF I + +++ A A ++ + L
Sbjct: 175 INSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPLRRRKL 234
Query: 335 KVEIS 321
+ S
Sbjct: 235 DIHFS 239
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATL 336
L I +DL F +G++ + + F+EF +++ AE A A+N E+ G +
Sbjct: 260 LDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRI 319
Query: 335 KVEISR 318
KVE SR
Sbjct: 320 KVEPSR 325
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/65 (16%), Positives = 29/65 (44%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATL 336
+ ++ +L F++YG + +++ GF I + +++ A A ++ + L
Sbjct: 175 INSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPLRRRKL 234
Query: 335 KVEIS 321
+ S
Sbjct: 235 DIHFS 239
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 38.3 bits (85), Expect = 0.003
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMNG 360
L E +DL+ F +YGK+ S V + GF F+ FEN +A A ++NG
Sbjct: 36 LAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNG 91
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/58 (31%), Positives = 35/58 (60%)
Frame = -1
Query: 500 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 327
++ D+ER F+ YGK+ +V + N FAF++F ++A A + + +++L + VE
Sbjct: 82 RERDMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKALDSTHNSKLLDKVVSVE 136
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/58 (31%), Positives = 35/58 (60%)
Frame = -1
Query: 500 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 327
++ D+ER F+ YGK+ +V + N FAF++F ++A A + + +++L + VE
Sbjct: 108 RERDMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKALDSTHNSKLLDKVVSVE 162
Score = 35.1 bits (77), Expect = 0.029
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = -1
Query: 500 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 357
+ DLER F K+G++ V + G+AF+ FE+ ++AEDA + T
Sbjct: 14 RHSDLERLFSKFGRVKRVDMK---SGYAFVYFEDERDAEDAIRRTDNT 58
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 37.1 bits (82), Expect = 0.007
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = -1
Query: 497 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 363
++D+ E KYG +N ++V N GF ++ F++++ A A AM+
Sbjct: 458 RDDVADECSKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAMH 502
Score = 34.3 bits (75), Expect = 0.050
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Frame = -1
Query: 488 LEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNG-TEMLGATLKV 330
L + F+ +G + V + L+P GF FI+F L+ ++ A A+NG E+ G T+KV
Sbjct: 281 LRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKV 339
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 37.1 bits (82), Expect = 0.007
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = -1
Query: 488 LEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 327
L F+KYG L V L+ GF FI F+ + ++A +AMNG ++ G T+ V+
Sbjct: 23 LRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVD 81
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 36.7 bits (81), Expect = 0.009
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Frame = -1
Query: 518 RLXEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTE 354
R+ G + ++E F ++G + V VA N F FI+FE+ + AE A AMN
Sbjct: 66 RIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDYL 125
Query: 353 MLGATLKVEI 324
++ LKV +
Sbjct: 126 LMEHMLKVHV 135
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 36.7 bits (81), Expect = 0.009
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = -1
Query: 500 KKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGATL 336
+ E+L F+++G + V++ + P GFAF+EF + +A +A +MN G +
Sbjct: 59 RPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREI 118
Query: 335 KVEIS 321
V ++
Sbjct: 119 TVVVA 123
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 36.7 bits (81), Expect = 0.009
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Frame = -1
Query: 494 EDLERE-FDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
EDL RE F ++GK+ S+ +A + G+AF+ F+N ++A A +NGT+ L V
Sbjct: 214 EDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYV 273
Query: 329 EISRK 315
++K
Sbjct: 274 GRAQK 278
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 35.9 bits (79), Expect = 0.016
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMNGTEML 348
L + + E L+ F +YG + S V +N G F F+ + N +EA A MNG +M+
Sbjct: 335 LDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNG-KMI 393
Query: 347 G 345
G
Sbjct: 394 G 394
Score = 31.1 bits (67), Expect = 0.47
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMNGTEM 351
L + I ++L++ F KYG ++S V + G F F+ F + + A A MNG +
Sbjct: 232 LPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISL 290
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMNG 360
L I + L F +G + S VA++ G+ F++FE + A+ A +NG
Sbjct: 139 LDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNG 194
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 35.5 bits (78), Expect = 0.022
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMNG 360
L E ++L+ F +YG ++S V + G F F+ FEN ++A A A+NG
Sbjct: 232 LSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNG 287
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 35.1 bits (77), Expect = 0.029
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = -1
Query: 494 EDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 315
+ L + F + +L P GF FI FE+ +A+ A A+NG + G + VE +++
Sbjct: 85 QSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAKE 144
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 35.1 bits (77), Expect = 0.029
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = -1
Query: 494 EDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 327
E+++ F G +N V + ++ P GFA++EF ++ ++A +N +E+ G LKV
Sbjct: 103 EEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LNESELHGRQLKVS 161
Query: 326 ISR 318
R
Sbjct: 162 PKR 164
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 35.1 bits (77), Expect = 0.029
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = -1
Query: 494 EDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 327
E+++ F G +N V + ++ P GFA++EF ++ ++A +N +E+ G LKV
Sbjct: 103 EEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LNESELHGRQLKVS 161
Query: 326 ISR 318
R
Sbjct: 162 PKR 164
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 35.1 bits (77), Expect = 0.029
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Frame = -1
Query: 518 RLXEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTE 354
RL + ++REF+ YG + V + + P G+AFIE+ + ++ + A +G +
Sbjct: 144 RLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQK 203
Query: 353 MLGATLKVEISR 318
+ G + V++ R
Sbjct: 204 IDGRRVLVDVER 215
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 35.1 bits (77), Expect = 0.029
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Frame = -1
Query: 494 EDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
++L F +GK+ S V ++ F FI +++ A++A + MNG ++ G LKV
Sbjct: 353 QELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKV 412
Query: 329 EISR 318
++ R
Sbjct: 413 QLKR 416
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 35.1 bits (77), Expect = 0.029
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Frame = -1
Query: 494 EDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
++L F +GK+ S V ++ F FI +++ A++A + MNG ++ G LKV
Sbjct: 344 QELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKV 403
Query: 329 EISR 318
++ R
Sbjct: 404 QLKR 407
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 34.7 bits (76), Expect = 0.038
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 425 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 321
GF FI FE+ + + A + MNG E+ G L++ ++
Sbjct: 261 GFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 34.7 bits (76), Expect = 0.038
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNGTEM 351
L + + DLE F K GK+ V + L+P GF FI +++ +A +++ + +
Sbjct: 82 LSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVL 141
Query: 350 LGATLKVEISRK 315
G + VE +R+
Sbjct: 142 QGRVITVEKARR 153
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 34.3 bits (75), Expect = 0.050
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Frame = -1
Query: 494 EDLERE-FDKYGKL---NSVW--VALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 333
ED R+ F+++G L N V VA P GFAF+ +E +EA A M+G + G +
Sbjct: 90 EDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIF 149
Query: 332 VE 327
VE
Sbjct: 150 VE 151
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 33.9 bits (74), Expect = 0.066
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEM 351
L E ++ DL F +G + V+VA++ GF F+ F + ++A+ A + +NG
Sbjct: 220 LSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGY 279
Query: 350 LGATLKVE 327
L+VE
Sbjct: 280 DNLILRVE 287
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 33.9 bits (74), Expect = 0.066
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMNG 360
L E + E+L + F ++G S + + GF F+ FEN +A A A+NG
Sbjct: 231 LSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNG 286
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 33.5 bits (73), Expect = 0.087
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = -1
Query: 494 EDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 327
E++++ F G +N V + + P GFA++EF ++ +++ +N +E+ G +KV
Sbjct: 117 EEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSL-ILNESELHGRQIKVS 175
Query: 326 ISR 318
R
Sbjct: 176 AKR 178
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 33.5 bits (73), Expect = 0.087
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = -1
Query: 494 EDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 327
ED+ F+KYG + + ++++ G FIE + +EA A ++ E G LKV+
Sbjct: 108 EDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVD 167
Query: 326 ISR 318
++
Sbjct: 168 YAK 170
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 33.5 bits (73), Expect = 0.087
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -1
Query: 425 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 321
G+ F+ F +EAE+A + +NG E++G + ++ S
Sbjct: 237 GYGFVSFATREEAENAITKLNGKEIMGRPITLKFS 271
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 33.1 bits (72), Expect = 0.12
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATL 336
L I ++L R YG++ + ++ +IEF +++ A A +NG E+ G L
Sbjct: 309 LDSSISNQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFDVRAAAAALGGLNGLEVAGKKL 368
Query: 335 KV 330
++
Sbjct: 369 QL 370
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 33.1 bits (72), Expect = 0.12
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNGTEMLG 345
+ +DLE F K GK+ S ++ + P GFAF+ +L++AE +N + + G
Sbjct: 83 VTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEG 140
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 33.1 bits (72), Expect = 0.12
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNGTEMLG 345
+ +DLE F K GK+ S ++ + P GFAF+ +L++AE +N + + G
Sbjct: 82 VTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEG 139
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 33.1 bits (72), Expect = 0.12
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNGTEM 351
L + + KE LE F + GK+ S V+ P GF F+ F + ++ E A A+N + +
Sbjct: 184 LAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLL 243
Query: 350 LGATLKV 330
G ++V
Sbjct: 244 EGQKIRV 250
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 33.1 bits (72), Expect = 0.12
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = -1
Query: 419 AFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 318
A+IE+ N +EA A A+N TE+ G L VEI++
Sbjct: 389 AYIEYSNSEEAT-AALALNNTEVFGRALNVEIAK 421
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 33.1 bits (72), Expect = 0.12
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 425 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 315
GFAF+ N+++ ++GTE LG LKV + K
Sbjct: 127 GFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADK 163
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 32.7 bits (71), Expect = 0.15
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = -1
Query: 476 FDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 321
F + G+L SV V N P G+ FIEF + AE NGT+M G L ++
Sbjct: 44 FSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTELTFRLN 100
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 32.7 bits (71), Expect = 0.15
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNGTEM 351
L + + DLE F K GK+ V + L+P GF FI +++ +A +++ + +
Sbjct: 52 LSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVL 111
Query: 350 LGATLKVE 327
G + VE
Sbjct: 112 QGRVITVE 119
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 32.3 bits (70), Expect = 0.20
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Frame = -1
Query: 494 EDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
E++++ F G ++ V + + P GFA++EF ++ ++A +N +E+ G LKV
Sbjct: 106 EEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQ-LNESELHGRQLKV 163
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 32.3 bits (70), Expect = 0.20
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -1
Query: 497 KEDLEREFDKYGKLNSVWVALN-PPGFAFIEFENLQEAEDACSAMNG 360
+ED++ E K+G +SV V + P G + F++ ++A+ AMNG
Sbjct: 430 EEDVKEESLKHGPFDSVKVCEHHPQGVVLVRFKDRRDAQKCIEAMNG 476
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 32.3 bits (70), Expect = 0.20
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = -1
Query: 494 EDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
EDL+R F ++G K+ + + GF F+ F++ + DA MNG E+ G + V
Sbjct: 20 EDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITV 79
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 32.3 bits (70), Expect = 0.20
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = -1
Query: 494 EDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
EDL+R F ++G K+ + + GF F+ F++ + DA MNG E+ G + V
Sbjct: 20 EDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITV 79
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 32.3 bits (70), Expect = 0.20
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = -1
Query: 494 EDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
EDL+R F ++G K+ + + GF F+ F++ + DA MNG E+ G + V
Sbjct: 20 EDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITV 79
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 32.3 bits (70), Expect = 0.20
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 434 NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
N G+AF +++L + AC+A+NG +M TL V
Sbjct: 398 NSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 432
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 32.3 bits (70), Expect = 0.20
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 434 NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
N G+AF +++L + AC+A+NG +M TL V
Sbjct: 398 NSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 432
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 32.3 bits (70), Expect = 0.20
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 434 NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
N G+AF +++L + AC+A+NG +M TL V
Sbjct: 398 NSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 432
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 32.3 bits (70), Expect = 0.20
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Frame = -1
Query: 497 KEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 333
+E L + F +YG++ V V ++ P GFA++ F + +EAE A +N + G +
Sbjct: 34 EETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVVI 93
Query: 332 VEISR 318
++ ++
Sbjct: 94 LDTTK 98
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 31.5 bits (68), Expect = 0.35
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGAT 339
+ ++ L+ F +G++ V +A + GF F++F +A A AM+G +LG
Sbjct: 52 VDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRP 111
Query: 338 LKVEIS 321
L++ +
Sbjct: 112 LRISFA 117
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 31.5 bits (68), Expect = 0.35
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMNG 360
L E DL+R F ++G++ S V + G F F+ FE + A A MNG
Sbjct: 126 LVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNG 181
Score = 31.1 bits (67), Expect = 0.47
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDACSAMNGTEML 348
L + + LE F ++G + S V ++ G + F+EF +EA A MNG +M+
Sbjct: 230 LDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNG-KMV 288
Query: 347 G 345
G
Sbjct: 289 G 289
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 31.1 bits (67), Expect = 0.47
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = -1
Query: 497 KEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 333
++ L F K G++ + ++ GF F+ F + EA+ A NG ++ G T+
Sbjct: 47 EQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIF 106
Query: 332 VEISR 318
V+ ++
Sbjct: 107 VDYAK 111
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 31.1 bits (67), Expect = 0.47
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = -1
Query: 497 KEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
K +L + F +G++ S+ + G+AF+EF QEA +A A+ T G L +
Sbjct: 682 KRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKALASTHFYGRHLVL 741
Query: 329 E 327
E
Sbjct: 742 E 742
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 422 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 315
F FI F + QEA+ A N T + + + VEI+ K
Sbjct: 11 FGFIGFRSAQEAQQAIKYFNNTYLGTSLIIVEIAHK 46
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 31.1 bits (67), Expect = 0.47
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 425 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 324
GF F+ + + EAE A S M+G E+ G + V++
Sbjct: 45 GFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVKL 78
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 31.1 bits (67), Expect = 0.47
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = -1
Query: 422 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 318
+AF+EF + ++A+DA ++G + G+ + VE SR
Sbjct: 5 YAFVEFSDPRDADDARYYLDGRDFDGSRITVEASR 39
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 31.1 bits (67), Expect = 0.47
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNGTEM 351
L +G +EDL++ F G++ V + NP G AF+ F +++A+ A + +
Sbjct: 221 LDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMI 280
Query: 350 LGATLKVEISR 318
G V S+
Sbjct: 281 NGKKCGVTASQ 291
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 31.1 bits (67), Expect = 0.47
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = -1
Query: 422 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 318
+AF+EF + ++A+DA ++G + G+ + VE SR
Sbjct: 5 YAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSR 39
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 31.1 bits (67), Expect = 0.47
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGAT 339
+ KE++++ F +G++ S+ + L+ P G AF++F+ + A SA + +G
Sbjct: 572 VTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAADTASGVGVL 631
Query: 338 LK 333
LK
Sbjct: 632 LK 633
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = -1
Query: 500 KKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNG 360
K D++ F G + V++ N P GFAF++F ++A +A NG
Sbjct: 343 KPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNG 394
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 30.7 bits (66), Expect = 0.61
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -1
Query: 422 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 318
F F+ +++ A++A MNG + G LKV++ R
Sbjct: 392 FGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQLKR 426
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAMNGT-EM 351
L + + + +++ F KYG + + + G AF+++E ++A A ++NG +M
Sbjct: 113 LPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKM 172
Query: 350 LGATLKVEI 324
G+T+ + +
Sbjct: 173 EGSTVPLVV 181
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 30.7 bits (66), Expect = 0.61
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = -1
Query: 491 DLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 327
DL F +YG++ V + + GFAF+ +E+ + A +NG +LG T+KV+
Sbjct: 51 DLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVD 110
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 30.7 bits (66), Expect = 0.61
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -1
Query: 488 LEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 318
L + F YG + + F+EF ++++A A MNG E+ G + +E SR
Sbjct: 229 LRQIFQVYGPIKELRETPYKKHQRFVEFYDVRDAARAFDRMNGKEIGGKQVVIEFSR 285
>At1g67550.1 68414.m07696 urease, putative / urea amidohydrolase,
putative similar to SP|P07374 Urease (EC 3.5.1.5) (Urea
amidohydrolase) {Canavalia ensiformis}; contains Pfam
profile PF01979: Amidohydrolase family
Length = 838
Score = 30.7 bits (66), Expect = 0.61
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 313 GTGPAEVGSEVGAAVTSGVVV--HSEVREEAGLTTHTVAAAAGRTIVT 176
GT PA + + + A + V H++ E+G HT+ A GRTI T
Sbjct: 494 GTTPAAIDNCLAVAEEYDIQVNIHTDTLNESGFVEHTINAFRGRTIHT 541
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 30.3 bits (65), Expect = 0.81
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNP------PGFAFIEFENLQEAED 381
+K+ED+E F +YGK+NSV + + G A +EF ++A++
Sbjct: 127 VKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQN 173
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 30.3 bits (65), Expect = 0.81
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = -1
Query: 506 GIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGA 342
G+ LE F++ GK+ V + GF F+ + QE + A +++NG ++ G
Sbjct: 259 GVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGR 318
Query: 341 TLKV 330
++V
Sbjct: 319 QIRV 322
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 30.3 bits (65), Expect = 0.81
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = -1
Query: 506 GIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGA 342
G+ LE F++ GK+ V + GF F+ + QE + A +++NG ++ G
Sbjct: 267 GVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGR 326
Query: 341 TLKV 330
++V
Sbjct: 327 QIRV 330
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATL 336
I +E + R F YG + +V + ++ + F+ F N + A+DA M+G + G +
Sbjct: 18 ITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMDGKSIGGRAV 77
Query: 335 KV 330
+V
Sbjct: 78 RV 79
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAMNGT-EM 351
L + + + +++ F KYG + + + G AF+++E ++A A ++NG +M
Sbjct: 113 LPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKM 172
Query: 350 LGATLKVEI 324
G+T+ + +
Sbjct: 173 EGSTVPLVV 181
>At3g61130.1 68416.m06841 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 673
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 467 YGKLNSVWVALNPPGFAFIEFENLQE 390
+G +N +W LNPPG A I EN+ E
Sbjct: 405 FGAMN-MWFLLNPPGKATIHVENVDE 429
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = -1
Query: 497 KEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAMNG 360
K ++ F +YG + +++AL+ G+AF++F + A A A+NG
Sbjct: 220 KMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALNG 269
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPP--GFAFIEFENLQEAEDACSAMNGTEMLGA 342
L +GI + + R F +YG ++V AF++F+N A A +NG LG
Sbjct: 35 LPDGIPHDIVSRLFSQYGA-SAVRPCSGGKLRNAAFVDFKNEAFASQAHRQLNGLRFLGK 93
Query: 341 TLKVEISRK 315
L+V+ + K
Sbjct: 94 VLQVQRANK 102
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = -1
Query: 497 KEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 333
+E L F + G++ + + L+ P GF F+ F + ++ EDA ++GT + ++
Sbjct: 47 EEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIR 106
Query: 332 VE 327
V+
Sbjct: 107 VD 108
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSAMNGTEML 348
L E + + L F YG++ S V + GF F+ F N +E++ A +NG +
Sbjct: 311 LSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVD 370
Query: 347 GATLKVEISRK 315
G + V ++ +
Sbjct: 371 GKPIVVRVAER 381
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 425 GFAFIEFENLQEAEDACSAMNG 360
GF F+ F N Q+A+ A + MNG
Sbjct: 186 GFGFVSFRNQQDAQTAINEMNG 207
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 324
+ L F YG++ V F+EF ++++A A MNG + G + ++
Sbjct: 194 VSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMNGKVISGKPMVIQF 253
Query: 323 SR 318
SR
Sbjct: 254 SR 255
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 434 NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
N G+AF +++ + AC+A+NG +M TL V
Sbjct: 414 NSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLTV 448
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 425 GFAFIEFENLQEAEDACSAMNG 360
GF F+ F N Q+A+ A + MNG
Sbjct: 194 GFGFVSFRNQQDAQTAINEMNG 215
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 425 GFAFIEFENLQEAEDACSAMNG 360
GF F+ F N Q+A+ A + MNG
Sbjct: 190 GFGFVSFRNQQDAQTAINEMNG 211
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = -1
Query: 509 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
+ I ++ L F YG + + + N P A ++ + +AE A + G + G L+V
Sbjct: 255 DSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEV 314
Query: 329 EISR 318
S+
Sbjct: 315 NFSK 318
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEM 351
L + + L+ F +G++ V +A++ P G ++EF+ +AE A M+G ++
Sbjct: 105 LSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQI 164
Query: 350 LGATLK 333
G +K
Sbjct: 165 DGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEM 351
L + + L+ F +G++ V +A++ P G ++EF+ +AE A M+G ++
Sbjct: 105 LSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQI 164
Query: 350 LGATLK 333
G +K
Sbjct: 165 DGKVVK 170
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 29.1 bits (62), Expect = 1.9
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEM 351
L E + DL F +G + VA++ GF F+ F + ++A+ A + +NG
Sbjct: 181 LSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGY 240
Query: 350 LGATLKVEIS 321
L+VE S
Sbjct: 241 DNLILRVEWS 250
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -1
Query: 431 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 318
P GF FI F++ +A A +++G + G + VE+++
Sbjct: 47 PKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVAK 84
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = -1
Query: 488 LEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 324
LE+ FD G++ V+V + AF+ E + AED ++GT+++G T+ V+
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEG-EGAEDKALQLSGTDVVGWTVIVKP 191
Query: 323 S 321
S
Sbjct: 192 S 192
>At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -1
Query: 509 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 369
E +++ + F K+GK+ + + +N AF++F +EAE A A
Sbjct: 448 ESNRRDLILAHFQKFGKVIDIHIPVNSER-AFVQFSKREEAESALRA 493
>At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -1
Query: 509 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 369
E +++ + F K+GK+ + + +N AF++F +EAE A A
Sbjct: 448 ESNRRDLILAHFQKFGKVIDIHIPVNSER-AFVQFSKREEAESALRA 493
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = -1
Query: 506 GIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGA 342
G L++ F +G++ V + GF F+ F A +A M+G E+ G
Sbjct: 45 GTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGR 104
Query: 341 TLKVEIS 321
++V ++
Sbjct: 105 QIRVNLA 111
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = -1
Query: 506 GIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGA 342
G L++ F +G++ V + GF F+ F A +A M+G E+ G
Sbjct: 45 GTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGR 104
Query: 341 TLKVEIS 321
++V ++
Sbjct: 105 QIRVNLA 111
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 425 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
GF F+ F++ + +DA MNG ++ G ++ V
Sbjct: 50 GFGFVTFKDEKAMKDAIEGMNGQDLDGRSITV 81
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 425 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
GF F+ F++ + +DA MNG ++ G ++ V
Sbjct: 50 GFGFVTFKDEKAMKDAIEGMNGQDLDGRSITV 81
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = -1
Query: 461 KLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEM 351
K N +W+ ++P G+ FIEF QEA++A +G ++
Sbjct: 89 KENGLWMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKL 130
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 425 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 330
GF F+ ++ E E A NG E+ G L+V
Sbjct: 133 GFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV 164
>At1g79880.3 68414.m09332 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 357
Score = 28.3 bits (60), Expect = 3.3
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 381
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 72 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 118
>At1g79880.2 68414.m09331 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 345
Score = 28.3 bits (60), Expect = 3.3
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 381
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 72 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 118
>At1g79880.1 68414.m09333 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 399
Score = 28.3 bits (60), Expect = 3.3
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = -1
Query: 503 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 381
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 126 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 172
>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
to U2 small nuclear ribonucleoprotein auxiliary factor
35 kD subunit related protein 1 (sp|Q15695)
Length = 757
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = -1
Query: 494 EDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 327
ED+ EF KYG+L + V N G ++ + +L+ A A ++NG G + E
Sbjct: 309 EDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCE 368
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = -1
Query: 494 EDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 357
EDL+R F ++G K+ + + GF F+ F++ + DA MNG+
Sbjct: 20 EDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGS 70
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = -1
Query: 497 KEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNGTEMLGATLK 333
++ L F+ +G+L V + ++ G+AF+E+ + A A MNG + G +
Sbjct: 295 EKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIV 354
Query: 332 VEISR 318
V++++
Sbjct: 355 VDVAK 359
>At1g35420.1 68414.m04394 dienelactone hydrolase family protein low
similarity to dienelactone hydrolase [Rhodococcus
opacus] GI:23094407; contains Pfam profile PF01738:
Dienelactone hydrolase family
Length = 310
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -1
Query: 515 LXEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 351
L IKK + + L +++ G +E ++ E E+AC +NGTE+
Sbjct: 37 LASSIKKHITTSFYRRGSSLKNIYALETSDGAINVEVDD-DEEEEACELVNGTEV 90
>At5g56180.2 68418.m07009 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 387
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +1
Query: 367 IALHASSASCKFSNSMKAKPGGFSATQTEF 456
I + S CKF S A P G SAT EF
Sbjct: 136 IIIDGGSGYCKFGWSKYASPSGRSATFLEF 165
>At5g56180.1 68418.m07008 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 471
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +1
Query: 367 IALHASSASCKFSNSMKAKPGGFSATQTEF 456
I + S CKF S A P G SAT EF
Sbjct: 136 IIIDGGSGYCKFGWSKYASPSGRSATFLEF 165
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 431 PPGFAFIEFENLQEAEDACSAMNG-TEMLGATLKVEIS 321
P GFAF E+E + A+ A +G + TLK IS
Sbjct: 47 PKGFAFAEYETEEIADYAVKLFSGLVSLYNRTLKFAIS 84
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,548,175
Number of Sequences: 28952
Number of extensions: 120782
Number of successful extensions: 505
Number of sequences better than 10.0: 127
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -