Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_M01
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    26   4.5  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   6.0  
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    25   7.9  

>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 398 PSRTPQLPSPTVPVTLLVTANGL 330
           P RTP LP  T+P T  V+A GL
Sbjct: 15  PGRTPHLPPLTIPHT--VSAEGL 35


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 410 DPTHPSRTPQLPSPTVPVTLLVTAN 336
           DP++P+ T   P P  P+  L+  N
Sbjct: 143 DPSNPNATSSSPPPLTPILELIKQN 167


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 327 PQAHIQLTHDGQYVVDTPEVQH 262
           P   I +T+DG  ++D  EV+H
Sbjct: 66  PDGEITVTNDGATILDQMEVEH 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,433,406
Number of Sequences: 5004
Number of extensions: 16616
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)