Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_M01
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0082 - 4060018-4061604                                           29   3.5  
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854...    29   3.5  
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228...    28   6.1  

>09_02_0082 - 4060018-4061604
          Length = 528

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 407 PTHPSRTPQLPSPTVPVTLLVTANGLVP 324
           P  P  TP +PSPTVP   +  A    P
Sbjct: 425 PAPPVPTPSMPSPTVPAPPVTAAPATAP 452


>02_05_1273 +
           35381626-35382486,35382567-35382691,35384851-35385450,
           35385550-35385841,35386199-35386364,35386664-35386707,
           35386866-35386979,35387171-35387290,35387541-35387626,
           35388340-35388502
          Length = 856

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 407 PTHPSRTPQLPSPTVPVTLL 348
           PT P   PQ PSPT P +LL
Sbjct: 121 PTAPPPRPQAPSPTAPPSLL 140


>06_01_0318 -
           2284481-2284594,2285340-2286044,2286589-2286609,
           2287186-2287257,2287762-2287842,2288059-2288133,
           2288197-2288484
          Length = 451

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 495 RGCRSHDRHEQGERDRTCKDRXQER 569
           R  RSH+R    ERDR+ +DR + +
Sbjct: 282 RRSRSHERDHDSERDRSDRDRGRHK 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,888,524
Number of Sequences: 37544
Number of extensions: 121659
Number of successful extensions: 354
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)