Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_L24
(697 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g47720.4 68418.m05895 acetyl-CoA C-acyltransferase, putative ... 176 1e-44
At5g47720.3 68418.m05894 acetyl-CoA C-acyltransferase, putative ... 176 1e-44
At5g47720.2 68418.m05896 acetyl-CoA C-acyltransferase, putative ... 176 1e-44
At5g47720.1 68418.m05893 acetyl-CoA C-acyltransferase, putative ... 176 1e-44
At5g48230.2 68418.m05959 acetyl-CoA C-acyltransferase, putative ... 167 5e-42
At5g48230.1 68418.m05958 acetyl-CoA C-acyltransferase, putative ... 167 5e-42
At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 / 3-keto... 116 1e-26
At5g48880.1 68418.m06046 acetyl-CoA C-acyltransferase 1 / 3-keto... 116 1e-26
At2g33150.1 68415.m04062 acetyl-CoA C-acyltransferase, putative ... 116 1e-26
At1g04710.1 68414.m00468 acetyl-CoA C-acyltransferase, putative ... 115 3e-26
At2g43800.1 68415.m05445 formin homology 2 domain-containing pro... 31 0.73
At1g22750.2 68414.m02843 expressed protein 31 0.96
At1g22750.1 68414.m02842 expressed protein 31 0.96
At4g01800.1 68417.m00237 preprotein translocase secA subunit, pu... 29 2.9
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 29 3.9
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 29 3.9
At1g56020.1 68414.m06431 expressed protein 29 3.9
At1g69280.1 68414.m07943 expressed protein 28 6.8
At3g57380.1 68416.m06387 expressed protein contains Pfam domain,... 27 9.0
At1g50620.1 68414.m05688 PHD finger family protein contains Pfam... 27 9.0
At1g22540.1 68414.m02815 proton-dependent oligopeptide transport... 27 9.0
At1g16040.1 68414.m01925 expressed protein similar To Phosphatid... 27 9.0
>At5g47720.4 68418.m05895 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 406
Score = 176 bits (428), Expect = 1e-44
Identities = 92/181 (50%), Positives = 122/181 (67%), Gaps = 2/181 (1%)
Frame = -1
Query: 697 IFAEDEEYXRVNFEKFTKLSTVFQKENGTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKP 518
+ +DE + + K KL F+++ G+VTAGNAS+++DG A L +
Sbjct: 226 VIDKDEGLGKFDAAKLKKLRPSFKEDGGSVTAGNASSISDGAAALVLVSGEKALELGLHV 285
Query: 517 IARIVGFADGECDPIDFPIAPAVAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLG 338
IA+I G+AD P F PA+AIPK +++ G+ V +EINEAFSVVA+ANQKLLG
Sbjct: 286 IAKIRGYADAAQAPELFTTTPALAIPKAIKRAGLDASQVDYYEINEAFSVVALANQKLLG 345
Query: 337 LDPSKINVHGGAVSLGHPIGMSGARIVVHLCHAL--KKGEKGVASICNGGGGASSVMIEK 164
LDP ++N HGGAVSLGHP+G SGARI+V L L KKG+ GVASICNGGGGAS++++E
Sbjct: 346 LDPERLNAHGGAVSLGHPLGCSGARILVTLLGVLRAKKGKYGVASICNGGGGASALVLEF 405
Query: 163 M 161
M
Sbjct: 406 M 406
>At5g47720.3 68418.m05894 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 405
Score = 176 bits (428), Expect = 1e-44
Identities = 92/181 (50%), Positives = 122/181 (67%), Gaps = 2/181 (1%)
Frame = -1
Query: 697 IFAEDEEYXRVNFEKFTKLSTVFQKENGTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKP 518
+ +DE + + K KL F+++ G+VTAGNAS+++DG A L +
Sbjct: 225 VIDKDEGLGKFDAAKLKKLRPSFKEDGGSVTAGNASSISDGAAALVLVSGEKALELGLHV 284
Query: 517 IARIVGFADGECDPIDFPIAPAVAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLG 338
IA+I G+AD P F PA+AIPK +++ G+ V +EINEAFSVVA+ANQKLLG
Sbjct: 285 IAKIRGYADAAQAPELFTTTPALAIPKAIKRAGLDASQVDYYEINEAFSVVALANQKLLG 344
Query: 337 LDPSKINVHGGAVSLGHPIGMSGARIVVHLCHAL--KKGEKGVASICNGGGGASSVMIEK 164
LDP ++N HGGAVSLGHP+G SGARI+V L L KKG+ GVASICNGGGGAS++++E
Sbjct: 345 LDPERLNAHGGAVSLGHPLGCSGARILVTLLGVLRAKKGKYGVASICNGGGGASALVLEF 404
Query: 163 M 161
M
Sbjct: 405 M 405
>At5g47720.2 68418.m05896 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 415
Score = 176 bits (428), Expect = 1e-44
Identities = 92/181 (50%), Positives = 122/181 (67%), Gaps = 2/181 (1%)
Frame = -1
Query: 697 IFAEDEEYXRVNFEKFTKLSTVFQKENGTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKP 518
+ +DE + + K KL F+++ G+VTAGNAS+++DG A L +
Sbjct: 225 VIDKDEGLGKFDAAKLKKLRPSFKEDGGSVTAGNASSISDGAAALVLVSGEKALELGLHV 284
Query: 517 IARIVGFADGECDPIDFPIAPAVAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLG 338
IA+I G+AD P F PA+AIPK +++ G+ V +EINEAFSVVA+ANQKLLG
Sbjct: 285 IAKIRGYADAAQAPELFTTTPALAIPKAIKRAGLDASQVDYYEINEAFSVVALANQKLLG 344
Query: 337 LDPSKINVHGGAVSLGHPIGMSGARIVVHLCHAL--KKGEKGVASICNGGGGASSVMIEK 164
LDP ++N HGGAVSLGHP+G SGARI+V L L KKG+ GVASICNGGGGAS++++E
Sbjct: 345 LDPERLNAHGGAVSLGHPLGCSGARILVTLLGVLRAKKGKYGVASICNGGGGASALVLEF 404
Query: 163 M 161
M
Sbjct: 405 M 405
>At5g47720.1 68418.m05893 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 405
Score = 176 bits (428), Expect = 1e-44
Identities = 92/181 (50%), Positives = 122/181 (67%), Gaps = 2/181 (1%)
Frame = -1
Query: 697 IFAEDEEYXRVNFEKFTKLSTVFQKENGTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKP 518
+ +DE + + K KL F+++ G+VTAGNAS+++DG A L +
Sbjct: 225 VIDKDEGLGKFDAAKLKKLRPSFKEDGGSVTAGNASSISDGAAALVLVSGEKALELGLHV 284
Query: 517 IARIVGFADGECDPIDFPIAPAVAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLG 338
IA+I G+AD P F PA+AIPK +++ G+ V +EINEAFSVVA+ANQKLLG
Sbjct: 285 IAKIRGYADAAQAPELFTTTPALAIPKAIKRAGLDASQVDYYEINEAFSVVALANQKLLG 344
Query: 337 LDPSKINVHGGAVSLGHPIGMSGARIVVHLCHAL--KKGEKGVASICNGGGGASSVMIEK 164
LDP ++N HGGAVSLGHP+G SGARI+V L L KKG+ GVASICNGGGGAS++++E
Sbjct: 345 LDPERLNAHGGAVSLGHPLGCSGARILVTLLGVLRAKKGKYGVASICNGGGGASALVLEF 404
Query: 163 M 161
M
Sbjct: 405 M 405
>At5g48230.2 68418.m05959 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 403
Score = 167 bits (407), Expect = 5e-42
Identities = 86/179 (48%), Positives = 118/179 (65%), Gaps = 2/179 (1%)
Frame = -1
Query: 697 IFAEDEEYXRVNFEKFTKLSTVFQKENGTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKP 518
I +DE + + K KL F++ GTVTAGNAS+++DG A +L +
Sbjct: 223 IVDKDEGLGKFDAAKLRKLRPSFKENGGTVTAGNASSISDGAAALVLVSGEKALQLGLLV 282
Query: 517 IARIVGFADGECDPIDFPIAPAVAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLG 338
+A+I G+ D +P F APA+AIPK + G+ V +EINEAF+VVA+ANQKLLG
Sbjct: 283 LAKIKGYGDAAQEPEFFTTAPALAIPKAIAHAGLESSQVDYYEINEAFAVVALANQKLLG 342
Query: 337 LDPSKINVHGGAVSLGHPIGMSGARIVVHLCHALKK--GEKGVASICNGGGGASSVMIE 167
+ P K+NV+GGAVSLGHP+G SGARI++ L LKK G+ GV +CNGGGGAS++++E
Sbjct: 343 IAPEKVNVNGGAVSLGHPLGCSGARILITLLGILKKRNGKYGVGGVCNGGGGASALVLE 401
>At5g48230.1 68418.m05958 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 398
Score = 167 bits (407), Expect = 5e-42
Identities = 86/179 (48%), Positives = 118/179 (65%), Gaps = 2/179 (1%)
Frame = -1
Query: 697 IFAEDEEYXRVNFEKFTKLSTVFQKENGTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKP 518
I +DE + + K KL F++ GTVTAGNAS+++DG A +L +
Sbjct: 218 IVDKDEGLGKFDAAKLRKLRPSFKENGGTVTAGNASSISDGAAALVLVSGEKALQLGLLV 277
Query: 517 IARIVGFADGECDPIDFPIAPAVAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLG 338
+A+I G+ D +P F APA+AIPK + G+ V +EINEAF+VVA+ANQKLLG
Sbjct: 278 LAKIKGYGDAAQEPEFFTTAPALAIPKAIAHAGLESSQVDYYEINEAFAVVALANQKLLG 337
Query: 337 LDPSKINVHGGAVSLGHPIGMSGARIVVHLCHALKK--GEKGVASICNGGGGASSVMIE 167
+ P K+NV+GGAVSLGHP+G SGARI++ L LKK G+ GV +CNGGGGAS++++E
Sbjct: 338 IAPEKVNVNGGAVSLGHPLGCSGARILITLLGILKKRNGKYGVGGVCNGGGGASALVLE 396
>At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 /
3-ketoacyl-CoA thiolase 1 (PKT1) identical to
3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
GI:3169568
Length = 457
Score = 116 bits (280), Expect = 1e-26
Identities = 72/179 (40%), Positives = 100/179 (55%), Gaps = 5/179 (2%)
Frame = -1
Query: 664 NFEKFTKLSTVFQKENGTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKPIARIVGFADGE 485
N KL TVF K+NG+ TAGNAS ++DG A + + + FA
Sbjct: 270 NMADLAKLKTVF-KQNGSTTAGNASQISDGAGAVLLMKRSLAMKKGLPILGVFRSFAVTG 328
Query: 484 CDPIDFPIAPAVAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLGLDPSKINVHGG 305
+P I PAVAIP + G+ D+ L+EINEAF+ V + K L LD K+NV+GG
Sbjct: 329 VEPSVMGIGPAVAIPAATKLAGLNVSDIDLFEINEAFASQYVYSCKKLELDMEKVNVNGG 388
Query: 304 AVSLGHPIGMSGARIVVHLCHALKKGEK----GVASICNGGG-GASSVMIEKM*VDNIT 143
A+++GHP+G +GAR V L H +K+ K GV S+C G G GA++V VDN++
Sbjct: 389 AIAIGHPLGATGARCVATLLHEMKRRGKDCRFGVISMCIGTGMGAAAVFERGDSVDNLS 447
>At5g48880.1 68418.m06046 acetyl-CoA C-acyltransferase 1 /
3-ketoacyl-CoA thiolase 1 (PKT1) identical to
3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
GI:3169568
Length = 414
Score = 116 bits (280), Expect = 1e-26
Identities = 72/179 (40%), Positives = 100/179 (55%), Gaps = 5/179 (2%)
Frame = -1
Query: 664 NFEKFTKLSTVFQKENGTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKPIARIVGFADGE 485
N KL TVF K+NG+ TAGNAS ++DG A + + + FA
Sbjct: 227 NMADLAKLKTVF-KQNGSTTAGNASQISDGAGAVLLMKRSLAMKKGLPILGVFRSFAVTG 285
Query: 484 CDPIDFPIAPAVAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLGLDPSKINVHGG 305
+P I PAVAIP + G+ D+ L+EINEAF+ V + K L LD K+NV+GG
Sbjct: 286 VEPSVMGIGPAVAIPAATKLAGLNVSDIDLFEINEAFASQYVYSCKKLELDMEKVNVNGG 345
Query: 304 AVSLGHPIGMSGARIVVHLCHALKKGEK----GVASICNGGG-GASSVMIEKM*VDNIT 143
A+++GHP+G +GAR V L H +K+ K GV S+C G G GA++V VDN++
Sbjct: 346 AIAIGHPLGATGARCVATLLHEMKRRGKDCRFGVISMCIGTGMGAAAVFERGDSVDNLS 404
>At2g33150.1 68415.m04062 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative similar to
3-ketoacyl-CoA thiolase (E.C. 2.3.1.16) from
[Arabidopsis thaliana] GI:2981616, [Cucumis sativus]
GI:393707, [Cucurbita cv. Kurokawa Amakuri] GI:1694621;
contains InterPro accession IPR002155: Thiolase
Length = 462
Score = 116 bits (280), Expect = 1e-26
Identities = 67/165 (40%), Positives = 96/165 (58%), Gaps = 4/165 (2%)
Frame = -1
Query: 646 KLSTVFQKENGTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKPIARIVGFADGECDPIDF 467
KL VF+K+ GT TAGN+S ++DG A + + + FA DP
Sbjct: 275 KLKPVFKKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIM 333
Query: 466 PIAPAVAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLGLDPSKINVHGGAVSLGH 287
I PAVAIP ++ G+ +D+ L+EINEAF+ V + LGLDP KINV+GGA+++GH
Sbjct: 334 GIGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAMAIGH 393
Query: 286 PIGMSGARIVVHLCHALKKGEK----GVASICNGGGGASSVMIEK 164
P+G +GAR V L H +K+ K GV S+C G G ++ + E+
Sbjct: 394 PLGATGARCVATLLHEMKRRGKDCRFGVVSMCIGTGMGAAAVFER 438
>At1g04710.1 68414.m00468 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative similar to
3-ketoacyl-CoA thiolase (E.C. 2.3.1.16) from
[Arabidopsis thaliana] GI:2981616, [Cucumis sativus]
GI:393707, [Cucurbita cv. Kurokawa Amakuri] GI:1694621;
contains InterPro accession IPR002155: Thiolase
Length = 443
Score = 115 bits (276), Expect = 3e-26
Identities = 67/165 (40%), Positives = 94/165 (56%), Gaps = 4/165 (2%)
Frame = -1
Query: 646 KLSTVFQKENGTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKPIARIVGFADGECDPIDF 467
KL VF KE+GT TAGN+S L+DG A + + + F+ DP
Sbjct: 267 KLKPVF-KEDGTTTAGNSSQLSDGAGAVLLMRRNVAMQKGLPILGVFRTFSAVGVDPAIM 325
Query: 466 PIAPAVAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLGLDPSKINVHGGAVSLGH 287
+ PAVAIP ++ G+ DV L+EINEAF+ V + LGLD KINV+GGA+++GH
Sbjct: 326 GVGPAVAIPAAVKAAGLELNDVDLFEINEAFASQFVYCRNKLGLDAEKINVNGGAIAIGH 385
Query: 286 PIGMSGARIVVHLCHALKKGEK----GVASICNGGGGASSVMIEK 164
P+G +GAR V L H +K+ K GV S+C G G ++ + E+
Sbjct: 386 PLGATGARCVATLLHEMKRRGKDCRFGVVSMCIGSGMGAAAVFER 430
>At2g43800.1 68415.m05445 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 894
Score = 31.1 bits (67), Expect = 0.73
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Frame = +3
Query: 159 YIFSIITDDAPPPPLQIEATPFSPFFKAWHRCT-TMRAPDIPIG*PKLTAPPCTLIFDGS 335
++FS + + PPPP PF P + AP P P A +L+F
Sbjct: 79 HLFSSVANPPPPPPSPPHPNPFFPSSDPTSTASHPPPAPPPPASLPTFPANISSLLFPTH 138
Query: 336 N-----PNNF*FATATTLKASFISHNATSS 410
N P+N A T+ AS IS A S
Sbjct: 139 NKQSKPPSNGHIARLVTITASVISAAALLS 168
>At1g22750.2 68414.m02843 expressed protein
Length = 247
Score = 30.7 bits (66), Expect = 0.96
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 126 MTILYIVMLSTYIFSIITDDAPPPPLQIEATPF 224
+ +++ +ML+T +++IITD P P Q TP+
Sbjct: 14 LPVMFCLMLATLVYTIITDGLPLPDRQDVFTPW 46
>At1g22750.1 68414.m02842 expressed protein
Length = 244
Score = 30.7 bits (66), Expect = 0.96
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 126 MTILYIVMLSTYIFSIITDDAPPPPLQIEATPF 224
+ +++ +ML+T +++IITD P P Q TP+
Sbjct: 14 LPVMFCLMLATLVYTIITDGLPLPDRQDVFTPW 46
>At4g01800.1 68417.m00237 preprotein translocase secA subunit,
putative similar to preprotein translocase secA subunit,
chloroplast [precursor] SP:Q9SYI0 from [Arabidopsis
thaliana]; non-consensus GA donor splice site at exon 4
Length = 1022
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -1
Query: 382 EAFSVVAVANQKLLGLDPSKINVHGGAV 299
EAF+VV A++++LGL P + + GG V
Sbjct: 140 EAFAVVREASKRVLGLRPFDVQLIGGMV 167
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = -3
Query: 635 GIPKGKWHC-YCRQCFNIK 582
G+PK +WHC C Q FN K
Sbjct: 83 GVPKSEWHCSRCVQAFNGK 101
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = -3
Query: 635 GIPKGKWHC-YCRQCFNIK 582
G+PK +WHC C Q FN K
Sbjct: 344 GVPKSEWHCSRCVQAFNGK 362
>At1g56020.1 68414.m06431 expressed protein
Length = 398
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 180 DDAPPPPLQIEATPFSPFFKAWHRCTTMRAPDIPIG*PKLTAPPCTLIFDGSNPNN 347
DD P L ++ +PF + + P I + P+ PP T DGS+ ++
Sbjct: 220 DDLPRLSLDLDKPSANPFAPSRTHSRNLNQPRIRLAKPRRNHPPSTPSVDGSSSSS 275
>At1g69280.1 68414.m07943 expressed protein
Length = 400
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 7/30 (23%)
Frame = -3
Query: 317 CTWWSCQFGSS-------NWYVWSSHCCTS 249
C W SC + SS +W WS CC+S
Sbjct: 339 CRWPSCDYNSSCGWLFCCHWSCWSCCCCSS 368
>At3g57380.1 68416.m06387 expressed protein contains Pfam domain,
PF04577: Protein of unknown function (DUF563)
Length = 504
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 238 LKKGEKGVASICNGGGGASSVMI 170
+KKGEK S+ GG GAS+V +
Sbjct: 8 IKKGEKHRLSVEEGGSGASAVTV 30
>At1g50620.1 68414.m05688 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 629
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = -3
Query: 641 VYGIPKGKWHC-YCRQCFNIK 582
+ G+PK +WHC C Q +N K
Sbjct: 357 IKGVPKSEWHCSRCVQLYNGK 377
>At1g22540.1 68414.m02815 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 557
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = +3
Query: 480 SHSPSANPTIRAIG----LTFNLLAASAVINTKA--AAPSFNVEALPAVTVPFSFWNTVD 641
+H P ++ IG L+F + +A++ K A + + P TVP S W V
Sbjct: 389 THKPGGITMLQRIGTGIFLSFLAMVVAALVEMKRLKTAADYGLVDSPDATVPMSVWWLVP 448
Query: 642 NFVNF 656
+V F
Sbjct: 449 QYVLF 453
>At1g16040.1 68414.m01925 expressed protein similar To
Phosphatidylinositol-glycan biosynthesis, class F
protein (PIG-F). (Mouse) (SP:O09101) [Mus musculus];
contains six transmembrane domains;
Length = 226
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -1
Query: 382 EAFSVVAVANQKLLGLDPSKINVHGGAVSLGHPIGMSGARIVVH 251
E S + L+GL + GAVSLG PIGM +H
Sbjct: 80 EKCSYFRAVGRSLVGLIAGALINALGAVSLGAPIGMQSLSKTIH 123
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,014,316
Number of Sequences: 28952
Number of extensions: 289835
Number of successful extensions: 924
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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