Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_L23
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 29 0.50
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 0.88
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 28 0.88
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 28 1.2
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 27 2.7
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 6.2
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 6.2
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ... 25 6.2
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 25 6.2
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 25 8.2
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 25 8.2
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 29.1 bits (62), Expect = 0.50
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = -3
Query: 288 FRGLLSN----LNL--PLVD-NFRQLQPLFGRRVFVRITSKNPKFKKTKLHYSKW 145
F GLLS+ L+L L+D +Q P RR+F R+ + N KK K + KW
Sbjct: 1605 FEGLLSSYPKRLDLWNVLIDMEMKQDDPSIVRRLFQRLLALNLSTKKAKFAFKKW 1659
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.3 bits (60), Expect = 0.88
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 242 SGSYNRCLVAVSSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSSTS 99
S S + +V+SS + SS +P S+TP + SP+ T STS
Sbjct: 453 STSVKQPTASVASSSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTS 500
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 28.3 bits (60), Expect = 0.88
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Frame = -1
Query: 230 NRCLVAVS--SSESHQRTLSSRRPNSTTPNGTGLDTRSPKM 114
+RC A+S SSESH + ++++P S TPN T + +S ++
Sbjct: 541 HRCEAAISSHSSESHSKR-TTQQPKS-TPNHTNIKVKSERL 579
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Frame = -1
Query: 230 NRCLVAVSSSESHQRTLSSRRP------NSTTPNGTGLDTRSPKMTSSTSMNKYIY 81
NR +S S +TL P + P +G+D+ S K+ +S++ N+YI+
Sbjct: 401 NRLKSLLSISSHLPKTLQLMEPLLDGILSQLVPKSSGIDSNSQKLLTSSTSNEYIH 456
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -3
Query: 510 KLLSPIVKNLTAIENFNSTLQL 445
K++SP +KNL A FNSTLQ+
Sbjct: 204 KVISPGLKNLGATCFFNSTLQV 225
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 212 VSSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSS 105
+SSS ++ T SS +++TP T T++ +TS+
Sbjct: 170 ISSSSTYNSTTSSYHNSTSTPPPTITSTKASTVTST 205
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 13 WXHWYFKRVTPVPYYLSVVIGYIYIYLF 96
W YF P+P +LSV + + Y+F
Sbjct: 344 WNLKYFISALPLPCFLSVQLRWFITYIF 371
>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 245
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 209 SSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSSTSMN 93
S+SES Q S+R NS TP T + + +++S ++
Sbjct: 177 STSESSQTDTSTRPANSQTPTTTRASSYTTLVSTSNQVS 215
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 221 LVAVSSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSSTSMNKYIY 81
LVA E Q +S P + T L + +P M ++ + K+IY
Sbjct: 364 LVAQLYEEMQQIPMSEMNPLLNLSSPTSLISSNPNMLANLPLRKHIY 410
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 25.0 bits (52), Expect = 8.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 218 VAVSSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSST 102
V+VS + T + P+S +PN G S + SST
Sbjct: 8 VSVSVASPAMETPTKASPDSKSPNSVGAIPSSSPLASST 46
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 25.0 bits (52), Expect = 8.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 173 RRPNSTTPNGTGLDTRSPKMTSSTSMNKYIYIYPITTD 60
+RP S P TG T +P+ T ++ +P T+D
Sbjct: 272 KRPASIAPQPTGASTIAPQPTGTSPSPPVEMNFPDTSD 309
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,755
Number of Sequences: 5004
Number of extensions: 52157
Number of successful extensions: 177
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -