Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_L23
(587 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1027| Best HMM Match : Carb_anhydrase (HMM E-Value=0) 71 9e-13
SB_43059| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 3e-12
SB_54473| Best HMM Match : DLIC (HMM E-Value=0) 61 6e-10
SB_3617| Best HMM Match : Carb_anhydrase (HMM E-Value=3.4e-15) 48 8e-06
SB_42832| Best HMM Match : ShTK (HMM E-Value=4.6e-07) 32 0.30
SB_9922| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_29286| Best HMM Match : Avirulence (HMM E-Value=2.3) 30 1.2
SB_24276| Best HMM Match : Extensin_2 (HMM E-Value=2.1e-05) 29 2.1
SB_27922| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_51797| Best HMM Match : Rhodanese (HMM E-Value=0.0056) 29 3.7
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_41346| Best HMM Match : Ion_trans (HMM E-Value=0) 28 6.5
SB_8307| Best HMM Match : F5_F8_type_C (HMM E-Value=2.7e-22) 28 6.5
SB_28558| Best HMM Match : NAD_synthase (HMM E-Value=0.027) 27 8.6
SB_10902| Best HMM Match : SH3_1 (HMM E-Value=0) 27 8.6
SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92) 27 8.6
SB_14196| Best HMM Match : FG-GAP (HMM E-Value=0) 27 8.6
>SB_1027| Best HMM Match : Carb_anhydrase (HMM E-Value=0)
Length = 291
Score = 70.5 bits (165), Expect = 9e-13
Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Frame = -3
Query: 561 DGLCVLAFFYQVVEFDAKLLSPIVKNLTAIENFNSTLQLPHTFSLSSILSGLDTERFYTY 382
DGL V++ ++ D L+ I+ NL + + + + + I+ DTE+FY Y
Sbjct: 166 DGLAVISVLFESSSTDNPALNEIIDNLQNASYKDEEITVQNV-PVGKIIP-TDTEKFYRY 223
Query: 381 KGSLTTPPCAEAVTWVIFSDYLPISVFQMDNFRGLLSNLNL-----PLVDNFRQLQPLFG 217
GSLTTPPC E V W++ IS Q+ FR + S LVDNFR Q L G
Sbjct: 224 NGSLTTPPCFETVKWIVLKKTASISEKQLRQFRSVFSTSRQATKPNSLVDNFRPTQSLNG 283
Query: 216 R 214
R
Sbjct: 284 R 284
>SB_43059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 722
Score = 68.9 bits (161), Expect = 3e-12
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Frame = -3
Query: 576 AMQHPDGLCVLAFFYQVVEFDAKLLSPIVKNLTAIENFNSTLQLPHTFSLSSILSGLDTE 397
A+ DGL V+ +V ++ L ++N+ ++ N++ + L +L +
Sbjct: 560 AVDKSDGLAVVGILLKVGT-ESAALKKFMENIGSVTKVNTSDEFAQPAKLGDLLPS--NK 616
Query: 396 RFYTYKGSLTTPPCAEAVTWVIFSDYLPISVFQMDNFRGLLSNLNLPLV-DNFRQLQPLF 220
FY Y+GSLTTP C E+VTW + ++ + +S Q+ RGL + ++ DNFR PL
Sbjct: 617 NFYRYQGSLTTPGCQESVTWSVMANPITVSEAQLAILRGLKQKDGVAVIQDNFRNTMPLN 676
Query: 219 GRRV 208
GR V
Sbjct: 677 GRAV 680
>SB_54473| Best HMM Match : DLIC (HMM E-Value=0)
Length = 1401
Score = 61.3 bits (142), Expect = 6e-10
Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Frame = -3
Query: 447 LPHTFSLSSILSGLDTERFYTYKGSLTTPPCAEAVTWVIFSDYLPISVFQMDNFRGLLSN 268
L FSL S+L +T+ F+ YKGSLTTPPC E+VTW + IS Q+ R ++
Sbjct: 725 LAQEFSLGSLLPS-NTD-FFRYKGSLTTPPCYESVTWTVMKTKTTISHDQLMKLRSIMEK 782
Query: 267 LNL-PLVDNFRQ-LQPLFGRRV 208
+ + DN+R LQPL GR V
Sbjct: 783 DGVHKITDNYRHILQPLNGRTV 804
>SB_3617| Best HMM Match : Carb_anhydrase (HMM E-Value=3.4e-15)
Length = 338
Score = 47.6 bits (108), Expect = 8e-06
Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = -3
Query: 393 FYTYKGSLTTPPCAEAVTWVIFSDYLPISVFQMDNFRGL--LSNLNLPLVDNFRQ-LQPL 223
+Y+YKGS T P C E+V W+I + I +M R L S N L DNFR L PL
Sbjct: 176 YYSYKGSQTAPACHESVRWIIVKQPVDIYRDEMAYLRRLESSSGKNGKLCDNFRPILYPL 235
Query: 222 FGRRVF 205
GR V+
Sbjct: 236 NGRTVY 241
>SB_42832| Best HMM Match : ShTK (HMM E-Value=4.6e-07)
Length = 500
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 239 GSYNRCLVAVSSSESHQRTLSSRRPNSTTPNGT-GLDTRSPKMTSS 105
G NRC V+ + SH RT S +R S T +G+ TR K T S
Sbjct: 433 GGDNRCTGRVTGTGSHTRTGSDKRTGSHTSSGSRHTSTRGNKCTGS 478
>SB_9922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 400
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 381 KGSLTTPPCAEAVTWVIFSDYLPISVFQMDNFRGLLSNLN 262
K SL +A+TW + D +PI + F+ L+S L+
Sbjct: 125 KSSLRYKAITKAITWFLAKDMVPIYTVEKPGFKALISTLD 164
>SB_29286| Best HMM Match : Avirulence (HMM E-Value=2.3)
Length = 662
Score = 30.3 bits (65), Expect = 1.2
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Frame = -3
Query: 531 QVVEFDAK--LLSPIVKNLTAIEN-FNSTLQLPHTFSLSSILSGLDTERFYTYKGSLTTP 361
QV + D K LL+P+ + AI+ STLQ+ ++LS + + K +L +P
Sbjct: 346 QVPDVDIKRTLLAPLQVSDVAIKRTLLSTLQVSDVGIKRTLLSTVQVS-YVAIKITLLSP 404
Query: 360 PCAEAVTWVIFSDYLPISVFQMDNFRGLLSNLNLPLVDNFRQLQPLF 220
V + Y P+ V + N R LLS + +P V N R L F
Sbjct: 405 YSMSDVA-IKRIPYRPLQVSDVANKRTLLSTVQVPDVANKRTLLTSF 450
>SB_24276| Best HMM Match : Extensin_2 (HMM E-Value=2.1e-05)
Length = 449
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 489 KNLTAIENFNSTLQLPHTFSLSSILSGLDTERFYTYKGSL 370
+ ++ I+N L+ P SL + G D RFY YKGS+
Sbjct: 248 RTISDIQNIAYLLEAPGMLSLKRDM-GFDQMRFYCYKGSV 286
>SB_27922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1704
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 25 YFKRVTPVPYYLSVVIGYIYIYLFIEV 105
Y+ + +PYYL++ IG I YL I V
Sbjct: 1138 YYLTIGVIPYYLAIAIGVIPYYLAIGV 1164
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = -1
Query: 209 SSSESHQRTLSSRRPNS----TTPNGTGLDTRSPKMTSST 102
+S S T SSRRP S T+ +GTG+ + PK +T
Sbjct: 919 TSPRSRPATSSSRRPTSRQSDTSEDGTGVSGKDPKSAETT 958
>SB_51797| Best HMM Match : Rhodanese (HMM E-Value=0.0056)
Length = 304
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -1
Query: 188 RTLSSRRPNSTTPNGTGLDTRSPKMTSSTSMNKYIYIYPITTD 60
R S +R N PN LD R K + ++ I++ P TTD
Sbjct: 36 RNTSDQRTNRKPPNLVMLDVREQKERDVSLIDGSIHVKPSTTD 78
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -1
Query: 209 SSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSSTSMNKYIYIYP 72
S+SES Q SS+ STTP T L S + S + + + P
Sbjct: 1567 SASESTQTQQSSQTTQSTTPTATALAVDSTTTSVMESRTQSVVVIP 1612
>SB_41346| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1264
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 218 VAVSSSESHQRTLS-SRRPNSTTPNGTGLDTRSPKMTSS 105
V +S S TLS SRR + TTPN SP++T +
Sbjct: 1180 VTLSDSRKQSVTLSDSRRQSVTTPNMRSSKVTSPQLTDN 1218
>SB_8307| Best HMM Match : F5_F8_type_C (HMM E-Value=2.7e-22)
Length = 370
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -3
Query: 186 NPKFKKTKLHYSKWD--WVGHKKSENDVIDFDE 94
N KK +L YS D WV H+++ N +ID +E
Sbjct: 130 NDYVKKYRLQYSLDDESWVTHEENGNQIIDANE 162
>SB_28558| Best HMM Match : NAD_synthase (HMM E-Value=0.027)
Length = 499
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 197 SHQRTLSSRRPNSTTPNGTGLDTRSPKMTSSTS 99
SH +T S STTPN G +S + S S
Sbjct: 273 SHMKTTDSGNDVSTTPNSLGTTVKSERFGSERS 305
>SB_10902| Best HMM Match : SH3_1 (HMM E-Value=0)
Length = 824
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -3
Query: 210 VFVRITSKNPKFKKTKLHYSKWDWVGHKKSENDVIDFD 97
++V + N F KT H + W GH S+ DF+
Sbjct: 770 IWVSLADGNGHFTKTSWHNKNFKWCGHPGSKLYTGDFN 807
>SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)
Length = 806
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = -1
Query: 221 LVAVSSSESHQRTLS-SRRPNST--TPNGTGLDTRSPKMTSS 105
LV+ S+S ++R+ SR P+ST TPN TG+ + P +++
Sbjct: 652 LVSSSASSKNRRSSPVSRSPHSTTGTPNATGITSAIPASSTT 693
>SB_14196| Best HMM Match : FG-GAP (HMM E-Value=0)
Length = 693
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -3
Query: 210 VFVRITSKNPKFKKTKLHYSKWDWVGHKKSENDVIDFD 97
++V + N F KT H + W GH S+ DF+
Sbjct: 303 IWVSLADGNGHFTKTSWHNKNFKWCGHPGSKLYTGDFN 340
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -3
Query: 210 VFVRITSKNPKFKKTKLHYSKWDWVGHKKSENDVIDFD 97
++V + N F KT H + W GH S+ DF+
Sbjct: 559 IWVSLADGNGHFTKTSWHNKNFKWCGHPGSKLYTGDFN 596
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,651,612
Number of Sequences: 59808
Number of extensions: 392731
Number of successful extensions: 1135
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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