Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_L22
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M...   178   5e-46
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    29   0.75 
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    26   4.0  
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    26   4.0  
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    26   4.0  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   4.0  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   7.0  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   7.0  

>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score =  178 bits (434), Expect = 5e-46
 Identities = 88/179 (49%), Positives = 121/179 (67%)
 Frame = -2

Query: 642 CAGDKDTVTXKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRMP 463
           CA ++D VT KA+D  + +  VFES   +++SDY++KLM++D EHLGIP+ EY  TI MP
Sbjct: 81  CAQNEDLVTLKAEDTPEVLNLVFESEKNDRISDYDVKLMDIDQEHLGIPDIEYDATITMP 140

Query: 462 SSEFARICRDLSQFGESMVISCTKEGVKFSATGDIGSANVKLAQTASIDKXXXXXXXXXX 283
           ++EF RI RDL    +S+ I+ +KEGV+FS  GDIG+ +  L Q   +            
Sbjct: 141 AAEFQRITRDLLTLSDSVTINASKEGVRFSCKGDIGNGSTTLKQHTDLSDQDQSIEISLT 200

Query: 282 XXVTLTFACQYLNYFTKATSLSPQVQLSMSADVPLVVEYRIPDIGHIRYYLAPKIEEED 106
             VTLTF+ +YL  FTKAT L+ +V LSMS DVPL+VEY++ + G +R+YLAPKI EED
Sbjct: 201 QAVTLTFSLKYLAQFTKATPLATRVTLSMSNDVPLLVEYKM-ESGFLRFYLAPKIGEED 258


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -2

Query: 249 LNYFTKATSLS-PQVQLSMSADVPLVVEYRIPD 154
           LNY T+A S+  P   +S S DVPL  E++IP+
Sbjct: 711 LNYHTQAVSIHHPSFYISRS-DVPLEEEFQIPN 742


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -2

Query: 519 DLEHLGIP-ETEYSCTIRMPSS 457
           +L  +G+P E EY C  R+PSS
Sbjct: 293 ELSRIGLPREFEYDCRTRVPSS 314


>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -3

Query: 380 SSRQQATSAQRTSSWPRPLLLTKRKRQSSLKWKSPSL 270
           S R+  TS +RT   P   +L ++++ ++L   +PS+
Sbjct: 92  SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSI 128


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -3

Query: 380 SSRQQATSAQRTSSWPRPLLLTKRKRQSSLKWKSPSL 270
           S R+  TS +RT   P   +L ++++ ++L   +PS+
Sbjct: 92  SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSI 128


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +1

Query: 448  SKFRTWHANSAAVFSLWNT*MFKIQIHKLHLVIRDFLLIWALKN 579
            ++F  W +      +  NT + + Q+ +LH++++ F+L    KN
Sbjct: 1032 NEFSEWFSKDIESHAQSNTQLNEQQLKRLHMILKPFMLRRVKKN 1075


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 480 SCIQSLEYLNVQDPNS*ASSRNQR 551
           SC Q LE  N+ DP S  S  N R
Sbjct: 384 SCFQLLERYNLSDPTSDTSMTNVR 407


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 633 DKDTVTXKAQDNADNVTFVFESPNQEKVSDYEMKLMNL 520
           D ++V  +A DN+D   FV E P +   SD ++K   L
Sbjct: 519 DMESVPTEAADNSDFPKFVTEQP-KTLASDVQLKSYQL 555


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,130,226
Number of Sequences: 5004
Number of extensions: 37701
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)