BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P01_pT_L22 (643 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M... 178 5e-46 SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 29 0.75 SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 26 4.0 SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 26 4.0 SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 26 4.0 SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 4.0 SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 7.0 SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 7.0 >SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||Manual Length = 260 Score = 178 bits (434), Expect = 5e-46 Identities = 88/179 (49%), Positives = 121/179 (67%) Frame = -2 Query: 642 CAGDKDTVTXKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRMP 463 CA ++D VT KA+D + + VFES +++SDY++KLM++D EHLGIP+ EY TI MP Sbjct: 81 CAQNEDLVTLKAEDTPEVLNLVFESEKNDRISDYDVKLMDIDQEHLGIPDIEYDATITMP 140 Query: 462 SSEFARICRDLSQFGESMVISCTKEGVKFSATGDIGSANVKLAQTASIDKXXXXXXXXXX 283 ++EF RI RDL +S+ I+ +KEGV+FS GDIG+ + L Q + Sbjct: 141 AAEFQRITRDLLTLSDSVTINASKEGVRFSCKGDIGNGSTTLKQHTDLSDQDQSIEISLT 200 Query: 282 XXVTLTFACQYLNYFTKATSLSPQVQLSMSADVPLVVEYRIPDIGHIRYYLAPKIEEED 106 VTLTF+ +YL FTKAT L+ +V LSMS DVPL+VEY++ + G +R+YLAPKI EED Sbjct: 201 QAVTLTFSLKYLAQFTKATPLATRVTLSMSNDVPLLVEYKM-ESGFLRFYLAPKIGEED 258 >SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 815 Score = 28.7 bits (61), Expect = 0.75 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = -2 Query: 249 LNYFTKATSLS-PQVQLSMSADVPLVVEYRIPD 154 LNY T+A S+ P +S S DVPL E++IP+ Sbjct: 711 LNYHTQAVSIHHPSFYISRS-DVPLEEEFQIPN 742 >SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|||Manual Length = 997 Score = 26.2 bits (55), Expect = 4.0 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%) Frame = -2 Query: 519 DLEHLGIP-ETEYSCTIRMPSS 457 +L +G+P E EY C R+PSS Sbjct: 293 ELSRIGLPREFEYDCRTRVPSS 314 >SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc|Schizosaccharomyces pombe|chr 2|||Manual Length = 181 Score = 26.2 bits (55), Expect = 4.0 Identities = 11/37 (29%), Positives = 22/37 (59%) Frame = -3 Query: 380 SSRQQATSAQRTSSWPRPLLLTKRKRQSSLKWKSPSL 270 S R+ TS +RT P +L ++++ ++L +PS+ Sbjct: 92 SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSI 128 >SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc|Schizosaccharomyces pombe|chr 2|||Manual Length = 181 Score = 26.2 bits (55), Expect = 4.0 Identities = 11/37 (29%), Positives = 22/37 (59%) Frame = -3 Query: 380 SSRQQATSAQRTSSWPRPLLLTKRKRQSSLKWKSPSL 270 S R+ TS +RT P +L ++++ ++L +PS+ Sbjct: 92 SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSI 128 >SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizosaccharomyces pombe|chr 1|||Manual Length = 1604 Score = 26.2 bits (55), Expect = 4.0 Identities = 11/44 (25%), Positives = 24/44 (54%) Frame = +1 Query: 448 SKFRTWHANSAAVFSLWNT*MFKIQIHKLHLVIRDFLLIWALKN 579 ++F W + + NT + + Q+ +LH++++ F+L KN Sbjct: 1032 NEFSEWFSKDIESHAQSNTQLNEQQLKRLHMILKPFMLRRVKKN 1075 >SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 1261 Score = 25.4 bits (53), Expect = 7.0 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = +3 Query: 480 SCIQSLEYLNVQDPNS*ASSRNQR 551 SC Q LE N+ DP S S N R Sbjct: 384 SCFQLLERYNLSDPTSDTSMTNVR 407 >SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccharomyces pombe|chr 3|||Manual Length = 1284 Score = 25.4 bits (53), Expect = 7.0 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -2 Query: 633 DKDTVTXKAQDNADNVTFVFESPNQEKVSDYEMKLMNL 520 D ++V +A DN+D FV E P + SD ++K L Sbjct: 519 DMESVPTEAADNSDFPKFVTEQP-KTLASDVQLKSYQL 555 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,130,226 Number of Sequences: 5004 Number of extensions: 37701 Number of successful extensions: 115 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 111 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 114 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 287744314 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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