Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_L22
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23876| Best HMM Match : PCNA_C (HMM E-Value=0)                     221   3e-58
SB_33734| Best HMM Match : ELMO_CED12 (HMM E-Value=4.4e-33)            29   4.2  
SB_35714| Best HMM Match : Vicilin_N (HMM E-Value=5)                   28   5.6  
SB_40620| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_23876| Best HMM Match : PCNA_C (HMM E-Value=0)
          Length = 225

 Score =  221 bits (541), Expect = 3e-58
 Identities = 98/179 (54%), Positives = 131/179 (73%)
 Frame = -2

Query: 642 CAGDKDTVTXKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRMP 463
           CAG++D +T  A+D  D VTF FESPN+EK S+Y+MKLM++D EHLGIP+  Y   I+MP
Sbjct: 42  CAGNEDRITIHAEDTGDTVTFSFESPNEEKTSEYKMKLMDIDSEHLGIPDQTYDAVIKMP 101

Query: 462 SSEFARICRDLSQFGESMVISCTKEGVKFSATGDIGSANVKLAQTASIDKXXXXXXXXXX 283
           S+EF RICRDLSQ G+S+ I+CTK+G+ F+ +G+ GS  V L Q AS+DK          
Sbjct: 102 SAEFQRICRDLSQMGDSVQIACTKDGIDFTVSGESGSGKVHLKQNASVDKESEEISIELN 161

Query: 282 XXVTLTFACQYLNYFTKATSLSPQVQLSMSADVPLVVEYRIPDIGHIRYYLAPKIEEED 106
             V LTFA +Y+N+F+KAT LS  V LS+  D+PLVVEY   D+GH++YYLAPKI++E+
Sbjct: 162 EAVNLTFALRYMNFFSKATPLSSSVTLSLKKDIPLVVEYTFADLGHVKYYLAPKIDDEE 220


>SB_33734| Best HMM Match : ELMO_CED12 (HMM E-Value=4.4e-33)
          Length = 535

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 558 EKVSDYEMKLMNLDLEHLGIPETEYSCTIRMPSSEF 451
           E + + EMKL  LDLE++ IPE+  +     P+ +F
Sbjct: 496 ETLLNMEMKLRLLDLENISIPESPPAIPPEPPNYDF 531


>SB_35714| Best HMM Match : Vicilin_N (HMM E-Value=5)
          Length = 288

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/41 (21%), Positives = 25/41 (60%)
 Frame = +2

Query: 371 AENFTPSFVHEITIDSPNCERSRQILANSELGMRIVQLYSV 493
           + N+T + ++ I+      E + ++ +NS LG+++ +++ V
Sbjct: 46  SSNYTQTLIYSISTSYTGAEGTTELGSNSNLGLKVTKIHRV 86


>SB_40620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 44  NKKKNPQIERIEINGTVSVQLSSSSILGAR 133
           N K+NP +   EIN  +   + S   LG R
Sbjct: 95  NNKRNPSLHEYEINSQILSSVDSHDYLGVR 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,434,633
Number of Sequences: 59808
Number of extensions: 268723
Number of successful extensions: 706
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)