Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_L22
(643 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-1|AAC48257.2| 229|Caenorhabditis elegans Pcna (prolife... 163 1e-40
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 28 6.5
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 28 6.5
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 28 6.5
>AF000298-1|AAC48257.2| 229|Caenorhabditis elegans Pcna
(proliferating cell nuclearantigen) homolog protein 1
protein.
Length = 229
Score = 163 bits (395), Expect = 1e-40
Identities = 74/181 (40%), Positives = 119/181 (65%), Gaps = 1/181 (0%)
Frame = -2
Query: 642 CAGDKDTVTXKAQDN-ADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 466
CA + DT K ++N D++ F F P ++K D +K+M++D EHLGIP+ +Y+ M
Sbjct: 47 CANNDDTCMLKYEENEGDSIIFTFADPKRDKTQDVTVKMMDIDSEHLGIPDQDYAVVCEM 106
Query: 465 PSSEFARICRDLSQFGESMVISCTKEGVKFSATGDIGSANVKLAQTASIDKXXXXXXXXX 286
P+ EF + C+DLS F +S+ I+ TK G+ F+ GDIGS+ V + +++ D
Sbjct: 107 PAGEFQKTCKDLSTFSDSLNITATKAGIVFTGKGDIGSSVVTYSPSSNTDDETEAVTLEV 166
Query: 285 XXXVTLTFACQYLNYFTKATSLSPQVQLSMSADVPLVVEYRIPDIGHIRYYLAPKIEEED 106
V + F+ +Y+N FTKAT+LS +V+LS+ DVP+VVEY I + G++R+YLAPKI++++
Sbjct: 167 KDPVNVNFSIKYMNQFTKATALSDRVRLSLCNDVPVVVEYPIEENGYLRFYLAPKIDDDE 226
Query: 105 S 103
+
Sbjct: 227 N 227
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 168 YRIPDIGHIRYYLAPKIEEEDS*TETVP 85
Y+ D GH+ +AP+IEEE+ T +P
Sbjct: 6834 YKFDDNGHV--VIAPQIEEEEETTPAIP 6859
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 168 YRIPDIGHIRYYLAPKIEEEDS*TETVP 85
Y+ D GH+ +AP+IEEE+ T +P
Sbjct: 7553 YKFDDNGHV--VIAPQIEEEEEATPAIP 7578
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 168 YRIPDIGHIRYYLAPKIEEEDS*TETVP 85
Y+ D GH+ +AP+IEEE+ T +P
Sbjct: 8327 YKFDDNGHV--VIAPQIEEEEETTPAIP 8352
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 168 YRIPDIGHIRYYLAPKIEEEDS*TETVP 85
Y+ D GH+ +AP+IEEE+ T +P
Sbjct: 9371 YKFDDNGHV--VIAPQIEEEEEATPAIP 9396
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 168 YRIPDIGHIRYYLAPKIEEEDS*TETVP 85
Y+ D GH+ +AP+IEEE+ T +P
Sbjct: 10090 YKFDDNGHV--VIAPQIEEEEEATPAIP 10115
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 168 YRIPDIGHIRYYLAPKIEEEDS*TETVP 85
Y+ D GH+ +AP+IEEE+ T +P
Sbjct: 6879 YKFDDNGHV--VIAPQIEEEEETTPAIP 6904
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 168 YRIPDIGHIRYYLAPKIEEEDS*TETVP 85
Y+ D GH+ +AP+IEEE+ T +P
Sbjct: 7598 YKFDDNGHV--VIAPQIEEEEEATPAIP 7623
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 168 YRIPDIGHIRYYLAPKIEEEDS*TETVP 85
Y+ D GH+ +AP+IEEE+ T +P
Sbjct: 8372 YKFDDNGHV--VIAPQIEEEEETTPAIP 8397
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 168 YRIPDIGHIRYYLAPKIEEEDS*TETVP 85
Y+ D GH+ +AP+IEEE+ T +P
Sbjct: 9416 YKFDDNGHV--VIAPQIEEEEEATPAIP 9441
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 168 YRIPDIGHIRYYLAPKIEEEDS*TETVP 85
Y+ D GH+ +AP+IEEE+ T +P
Sbjct: 10135 YKFDDNGHV--VIAPQIEEEEEATPAIP 10160
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 168 YRIPDIGHIRYYLAPKIEEEDS*TETVP 85
Y+ D GH+ +AP+IEEE+ T +P
Sbjct: 6879 YKFDDNGHV--VIAPQIEEEEETTPAIP 6904
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 168 YRIPDIGHIRYYLAPKIEEEDS*TETVP 85
Y+ D GH+ +AP+IEEE+ T +P
Sbjct: 7598 YKFDDNGHV--VIAPQIEEEEEATPAIP 7623
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 168 YRIPDIGHIRYYLAPKIEEEDS*TETVP 85
Y+ D GH+ +AP+IEEE+ T +P
Sbjct: 8372 YKFDDNGHV--VIAPQIEEEEETTPAIP 8397
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 168 YRIPDIGHIRYYLAPKIEEEDS*TETVP 85
Y+ D GH+ +AP+IEEE+ T +P
Sbjct: 9416 YKFDDNGHV--VIAPQIEEEEEATPAIP 9441
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 168 YRIPDIGHIRYYLAPKIEEEDS*TETVP 85
Y+ D GH+ +AP+IEEE+ T +P
Sbjct: 10135 YKFDDNGHV--VIAPQIEEEEEATPAIP 10160
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,661,536
Number of Sequences: 27780
Number of extensions: 208663
Number of successful extensions: 615
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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