Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_L22
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29570.1 68415.m03591 proliferating cell nuclear antigen 2 (P...   226   1e-59
At1g07370.1 68414.m00786 proliferating cell nuclear antigen 1 (P...   226   1e-59
At1g22160.1 68414.m02770 senescence-associated protein-related s...    28   4.6  
At4g25340.1 68417.m03647 immunophilin-related / FKBP-type peptid...    28   6.1  

>At2g29570.1 68415.m03591 proliferating cell nuclear antigen 2
           (PCNA2) identical to SP|Q9ZW35 Proliferating cell
           nuclear antigen 2 (PCNA 2) {Arabidopsis thaliana};
           nearly identical to SP|Q43124 Proliferating cell nuclear
           antigen (PCNA) {Brassica napus}; contains Pfam profiles
           PF00705: Proliferating cell nuclear antigen N-terminal
           domain, PF02747: Proliferating cell nuclear antigen
           C-terminal domain
          Length = 264

 Score =  226 bits (552), Expect = 1e-59
 Identities = 101/179 (56%), Positives = 138/179 (77%)
 Frame = -2

Query: 642 CAGDKDTVTXKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRMP 463
           CAG+ D +T KA D +D VTF+FESP Q+K++D+EMKLM++D EHLGIP+ EY   +RMP
Sbjct: 81  CAGNDDIITIKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPDAEYHSIVRMP 140

Query: 462 SSEFARICRDLSQFGESMVISCTKEGVKFSATGDIGSANVKLAQTASIDKXXXXXXXXXX 283
           S EF+RIC+DLS  G+++VIS TKEGVKFS  GDIG+AN+ L Q  ++DK          
Sbjct: 141 SGEFSRICKDLSSIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMN 200

Query: 282 XXVTLTFACQYLNYFTKATSLSPQVQLSMSADVPLVVEYRIPDIGHIRYYLAPKIEEED 106
             V+L+FA +Y+N FTKAT LS  V +S+S+++P+VVEY++ ++G+IRYYLAPKIEEE+
Sbjct: 201 EPVSLSFALRYMNSFTKATPLSETVTISLSSELPVVVEYKVAEMGYIRYYLAPKIEEEE 259


>At1g07370.1 68414.m00786 proliferating cell nuclear antigen 1
           (PCNA1) identical to SP|Q9M7Q7 Proliferating cellular
           nuclear antigen 1 (PCNA 1) {Arabidopsis thaliana};
           nearly identical to SP|Q43124 Proliferating cell nuclear
           antigen (PCNA) {Brassica napus}; contains Pfam profiles
           PF00705: Proliferating cell nuclear antigen N-terminal
           domain, PF02747: Proliferating cell nuclear antigen
           C-terminal domain
          Length = 263

 Score =  226 bits (552), Expect = 1e-59
 Identities = 101/179 (56%), Positives = 138/179 (77%)
 Frame = -2

Query: 642 CAGDKDTVTXKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRMP 463
           CAG+ D +T KA D  D VTF+FESP Q+K++D+EMKLM++D EHLGIP+ EY   +RMP
Sbjct: 81  CAGNDDIITIKADDGGDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPDAEYHSIVRMP 140

Query: 462 SSEFARICRDLSQFGESMVISCTKEGVKFSATGDIGSANVKLAQTASIDKXXXXXXXXXX 283
           S+EF+RIC+DLS  G+++VIS TKEGVKFS  GDIG+AN+ L Q  ++DK          
Sbjct: 141 SNEFSRICKDLSSIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMK 200

Query: 282 XXVTLTFACQYLNYFTKATSLSPQVQLSMSADVPLVVEYRIPDIGHIRYYLAPKIEEED 106
             V+L+FA +Y+N FTKAT LS  V +S+S+++P+VVEY++ ++G+IRYYLAPKIEEE+
Sbjct: 201 EPVSLSFALRYMNSFTKATPLSDTVTISLSSELPVVVEYKVAEMGYIRYYLAPKIEEEE 259


>At1g22160.1 68414.m02770 senescence-associated protein-related
           similar to senescence-associated protein SAG102
           (GI:22331931) [Arabidopsis thaliana]
          Length = 147

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/81 (20%), Positives = 36/81 (44%)
 Frame = -2

Query: 636 GDKDTVTXKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRMPSS 457
           G +     K   +   + F    P++++ SD++++L+N+D EH  + +      +    S
Sbjct: 4   GKRQRPPIKRTTSLSEIKFDLNQPSEQEPSDHQIQLVNVD-EHRQVHQRLLDQRLLAMVS 62

Query: 456 EFARICRDLSQFGESMVISCT 394
                 R  S + E  + SC+
Sbjct: 63  PRGTQRRHSSDYSEDFLRSCS 83


>At4g25340.1 68417.m03647 immunophilin-related / FKBP-type
           peptidyl-prolyl cis-trans isomerase-related immunophilin
           FKBP46 - Spodoptera frugiperda (fall
           armyworm),PIR2:A55320
          Length = 477

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 26  ERNIHDNKKKNPQIERIEINGTVSVQLSSSS 118
           E+   + KKK P  E  EI+GTV  Q  + S
Sbjct: 329 EKKTKNKKKKKPSDEAAEISGTVEKQTPADS 359


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,940,653
Number of Sequences: 28952
Number of extensions: 191843
Number of successful extensions: 472
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)