Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_L21
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.83 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   2.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 98  DRRLRGCNAAHNRLQVLEGLSF-DIFVVFLVNNN 196
           D +++  +A+HNR+  L  LS  D   +  +NNN
Sbjct: 594 DSKVKTLDASHNRITELSPLSVPDSVELLFINNN 627


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 661 SSPRHSRAASESKPAGESSSCCF 729
           SSP+HS +++ + PA  ++S  +
Sbjct: 67  SSPQHSGSSASTSPAARTTSSMY 89


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 61  CKISLNAIHFTSRSTAAG 114
           CKI+    H TS S+AAG
Sbjct: 405 CKINRKVHHTTSSSSAAG 422


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 577 LAPVWRDFRGLVKVKMVPYGKSTHDKV 497
           L  VW D++G+V  +++P  ++ +  V
Sbjct: 189 LLSVWWDYKGIVYFELLPPNRTINSVV 215


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,342
Number of Sequences: 438
Number of extensions: 4761
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)